Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1925g00005 ATGGCTTTTCAGGACCATCTACCCCACGAAATCACTTTTCAGCAATTCACGGACGAGCAACAGTTAAGTCAGGGAAGAGACATGCAGAGGCTTCTACCTCTCTCTGCCGGCGGAGGCGGCGGAGGAGCAGCTCCGACGTGGCTCAACAACGCGGCGACCCTTCGGCAACAGAATTTCCTCCACTTGCAACCGGACTCAACAGTGCAAAACGACGACGTTCGGGGCATGATGGGGTCAGAGAAAAGCATGGATCGGAACCGGACGGAGAGTAATTGCGAATCGGAGGATTTGGCAGAATACAAAGCAGACATTTTGGGACACCCTCTTTACGATCAACTGTTATCGGCTCACGTTTCGTGTTTGAGGATTGCCACTCCCGTTGACCAGCTTCCTCGGATCGATGCTCAGCTTCAACAATCGCAGCGCGTGGTTGACAAGTACTCTGGCCTTGGAAATGGAGTTGTTGATGAGAAGGAACTTGATCAATTCATGACGCATTATGTTCTATTGCTTTGCGCTTTTAAAGAACAATTGCAACAACATGTTCGCGTTCATGCCATGGAAGCTGTTATGGCTTGCTGGGAGCTCGAGCAGTCTCTACAAAGCTTGACTGGTGTATCTCCTGGGGAAGGAACTGGTGCAACTATGTCCGATGATGAAGAAGACCAGGCTGAGAGCAATGCAAACTTATACGAAGGAAGCATGGATGGTGCTGATAGTCTCAGCTTTGGCCCTCTTGTTCCCACTGAAAGTGAAAGATCTTTGATGGAGCGCGTGAGGCAGGAGTTGAAGCATGAGCTTAAACAGGGTTACAAGGACAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCGGGGAAGCTTCCGGGGGACACTACCTCTCTTTTAAAAGCTTGGTGGCAGTCACATTCTAAATGGCCCTATCCAACGGAAGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGTTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACTAACCCTTCGTCCTCTAGTGGCTCCAAAAGCAAGCGTAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1116 0.483 MAFQDHLPHEITFQQFTDEQQLSQGRDMQRLLPLSAGGGGGGAAPTWLNNAATLRQQNFLHLQPDSTVQNDDVRGMMGSEKSMDRNRTESNCESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTESERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSGAGETSNQSFM 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1925g00005 371 SMART ELK_2 262 283 IPR005539 GO:0003677
Gabi1925g00005 371 FunFam homeobox protein knotted-1-like 3 isoform X1 283 344 - -
Gabi1925g00005 371 Pfam KNOX2 domain 155 204 IPR005541 GO:0003677|GO:0005634
Gabi1925g00005 371 Pfam Homeobox KN domain 302 341 IPR008422 GO:0003677|GO:0006355
Gabi1925g00005 371 SMART HOX_1 284 349 IPR001356 GO:0003677
Gabi1925g00005 371 Pfam KNOX1 domain 100 141 IPR005540 GO:0003677|GO:0005634
Gabi1925g00005 371 ProSiteProfiles 'Homeobox' domain profile. 282 345 IPR001356 GO:0003677
Gabi1925g00005 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 133 356 - -
Gabi1925g00005 371 SUPERFAMILY Homeodomain-like 284 348 IPR009057 -
Gabi1925g00005 371 MobiDBLite consensus disorder prediction 204 225 - -
Gabi1925g00005 371 SMART KNOX1_2 98 142 IPR005540 GO:0003677|GO:0005634
Gabi1925g00005 371 MobiDBLite consensus disorder prediction 339 371 - -
Gabi1925g00005 371 Gene3D - 288 365 - -
Gabi1925g00005 371 ProSiteProfiles ELK domain profile. 262 282 IPR005539 GO:0003677
Gabi1925g00005 371 CDD homeodomain 285 346 IPR001356 GO:0003677
Gabi1925g00005 371 Pfam ELK domain 262 283 IPR005539 GO:0003677
Gabi1925g00005 371 SMART KNOX2_2 149 205 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1925g00005 Gabi-Chr1925 15315 20847 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1925g00005 47 366 Homeobox Transcription Factor Family AT5G11060 72.840 1.83e-166 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi1925g00005 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1925g00005 - - gmx:100816347 653.669