Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1925g00003 ATGGCTTTTCAGGACCATCTACCCCACGAAATCACTTTTCAGCAATTCACGGACGAGCAACAGTTAACAGCTCCGACGTGGCTCAACAACGCGGCGACCCTTCGGCAACAGAATTTCCTCCACTTGCAACCGGACTCAACAGTGCAAAACGACGACGTTCGGGGCATGATGGGGTCAGAGAAAAGCATGGATCGGAACCGGACGGAGAGTAATTGCGAATCGGAGGATTTGGCAGAATACAAAGCAGACATTTTGGGACACCCTCTTTACGATCAACTGTTATCGGCTCACGTTTCGTGTTTGAGGATTGCCACTCCCGTTGACCAGCTTCCTCGGATCGATGCTCAGCTTCAACAATCGCAGCGCGTGGTTGACAAGTACTCTGGCCTTGGAAATGGAGTTGTTGATGAGAAGGAACTTGATCAATTCATGACGCATTATGTTCTATTGCTTTGCGCTTTTAAAGAACAATTGCAACAACATGTTCGCGTTCATGCCATGGAAGCTGTTATGGCTTGCTGGGAGCTCGAGCAGTCTCTACAAAGCTTGACTGGTGTATCTCCTGGGGAAGGAACTGGTGCAACTATGTCCGATGATGAAGAAGACCAGGCTGAGAGCAATGCAAACTTATACGAAGGAAGCATGGATGGTGCTGATAGTCTCAGCTTTGGCCCTCTTGTTCCCACTGAAAGTGAAAGATCTTTGATGGAGCGCGTGAGGCAGGAGTTGAAGCATGAGCTTAAACAGGGTTACAAGGACAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCGGGGAAGCTTCCGGGGGACACTACCTCTCTTTTAAAAGCTTGGTGGCAGTCACATTCTAAATGGCCCTATCCAACGGAAGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGTTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACTAACCCTTCGTCCTCTAGTGGCTCCAAAAGCAAGCGTAAGAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1053 0.4739 MAFQDHLPHEITFQQFTDEQQLTAPTWLNNAATLRQQNFLHLQPDSTVQNDDVRGMMGSEKSMDRNRTESNCESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTESERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSGAGETSNQSFM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1925g00003 350 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Gabi1925g00003 350 SMART KNOX2_2 129 185 IPR005541 GO:0003677|GO:0005634
Gabi1925g00003 350 SMART HOX_1 264 329 IPR001356 GO:0003677
Gabi1925g00003 350 Pfam KNOX2 domain 135 184 IPR005541 GO:0003677|GO:0005634
Gabi1925g00003 350 MobiDBLite consensus disorder prediction 319 350 - -
Gabi1925g00003 350 Pfam KNOX1 domain 80 121 IPR005540 GO:0003677|GO:0005634
Gabi1925g00003 350 ProSiteProfiles ELK domain profile. 242 262 IPR005539 GO:0003677
Gabi1925g00003 350 MobiDBLite consensus disorder prediction 43 70 - -
Gabi1925g00003 350 Pfam ELK domain 242 263 IPR005539 GO:0003677
Gabi1925g00003 350 Pfam Homeobox KN domain 282 321 IPR008422 GO:0003677|GO:0006355
Gabi1925g00003 350 SUPERFAMILY Homeodomain-like 264 328 IPR009057 -
Gabi1925g00003 350 ProSiteProfiles 'Homeobox' domain profile. 262 325 IPR001356 GO:0003677
Gabi1925g00003 350 MobiDBLite consensus disorder prediction 184 205 - -
Gabi1925g00003 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 330 - -
Gabi1925g00003 350 SMART ELK_2 242 263 IPR005539 GO:0003677
Gabi1925g00003 350 CDD homeodomain 265 326 IPR001356 GO:0003677
Gabi1925g00003 350 Gene3D - 261 340 - -
Gabi1925g00003 350 FunFam homeobox protein knotted-1-like 3 isoform X1 263 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1925g00003 Gabi-Chr1925 15314 20850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1925g00003 27 347 Homeobox Transcription Factor Family AT5G11060 72.615 1.58e-168 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi1925g00003 KNOX2 2.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1925g00003 - - gmx:100816347 634.024