Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1924g00008 ATGGATTTTGATACTTCTTTTTTCCAGTACCAAAACCTTAACTCTTCTTCCCTTGCAAATTCCCCTGTTTCTTCAGAATCTTTCTCCTGGGAAGACTTCTTTATCTTCAATGAAGACAACACCACCCTTCCCTTCAACTTCACTGACCACTCACAAACAAAGGAATTATCATCTTCAGATTCAAACTCCTCTTCAGGCTCTCTGGGCAGAACCAAATCACAAGAAGTCTCCTCCAATTGTTCAACTTATGCACAAGTGAAAGAAACACATGCATCATCAGCATCAGCATCACCACCACTACTCAAGGAAAATAACAGAGAGAAGAGGCCCTTCAGAGGAGTGAGGAGAAGGCCATGGGGAAAATTCGCAGCAGAGATAAGGGACTCAACAAGAAAAGGGGTTCGAGTGTGGATTGGGACGTTCGACACAGCAGAGGCAGCTGCATTAGCTTATGATCAAGCAGCTTTATCAACAAGAGGTTCTATGGCAGTGCTGAATTTCCCAGAGGAAGTGGTGAGGGAATCACTTGAAGAAATGGCTAACAATAAATTGTGGGAAGCTGGTTCCTCTCCTGTGCTAGCACTCAAGAGGAAACACACCATGAGAAGAAAGTCCAAGGCTAGTAACAAAAAGACCAAAAGGGATAGCAGAGAATTAGATATCCTTTCCGAAAATGTGCTTGTGTTGGAGGATTTGGGTTCTGAATATCTTGAACAACTTCTCAGCTTGACTTCTTCTGAACTCATGAGTTAG 753 0.4303 MDFDTSFFQYQNLNSSSLANSPVSSESFSWEDFFIFNEDNTTLPFNFTDHSQTKELSSSDSNSSSGSLGRTKSQEVSSNCSTYAQVKETHASSASASPPLLKENNREKRPFRGVRRRPWGKFAAEIRDSTRKGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLEEMANNKLWEAGSSPVLALKRKHTMRRKSKASNKKTKRDSRELDILSENVLVLEDLGSEYLEQLLSLTSSELMS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1924g00008 250 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Gabi1924g00008 250 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Gabi1924g00008 250 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Gabi1924g00008 250 MobiDBLite consensus disorder prediction 47 100 - -
Gabi1924g00008 250 FunFam Ethylene-responsive transcription factor 2 109 169 - -
Gabi1924g00008 250 SUPERFAMILY DNA-binding domain 111 169 IPR016177 GO:0003677
Gabi1924g00008 250 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
Gabi1924g00008 250 PANTHER DNA-BINDING DOMAIN 64 242 IPR044808 GO:0003700|GO:0009873
Gabi1924g00008 250 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Gabi1924g00008 250 Gene3D AP2/ERF domain 110 170 IPR036955 GO:0003700|GO:0006355
Gabi1924g00008 250 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Gabi1924g00008 250 MobiDBLite consensus disorder prediction 47 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1924g00008 Gabi-Chr1924 235048 235800 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1924g00008 87 241 AP2-EREBP Transcription Factor Family AT3G23240 56.604 3.63e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1924g00008 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1924g00008 K14516 - gmx:100784784 263.077