Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1924g00006 ATGGATCAGGGAGAGAGATCAGTTTCAAATGGAAATGGGGAGGTTCGGTATAGAGGGATTCGTAGAAGGCCATGGGGTAAGTTTGCAGCAGAGATTCGTGACCCTACAAGGAAAGGGACTCGTATATGGTTAGGAACCTTTGACACTGCTGAGCAAGCTGCACGAGCTTATGATGCTGCTGCTTTTCATTTCCGTGGTCACAGAGCCATTCTCAATTTCCCAAATGAGTATCAGGCTCCTAATCAAAACTCTTCATTACCTATGCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTGCCTCCTCCTCCTTCTTCTTCTTATTCTTCTTCCTCTTCCCACTCTGTTGAGGACCTTGTGAAAACTGGTTTTTCTGGTGATGATGCTTTTGAATTGGAATACTTGGATAATAAGTTGCTTGAAGAACTCCTTCAGGCGCAAGATGATAGACATCTGTACAAGTGA 465 0.4473 MDQGERSVSNGNGEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQAPNQNSSLPMPLPLPLPLPLPLPPPPSSSYSSSSSHSVEDLVKTGFSGDDAFELEYLDNKLLEELLQAQDDRHLYK 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1924g00006 154 PANTHER DNA-BINDING DOMAIN 13 145 IPR044808 GO:0003700|GO:0009873
Gabi1924g00006 154 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Gabi1924g00006 154 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Gabi1924g00006 154 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Gabi1924g00006 154 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Gabi1924g00006 154 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Gabi1924g00006 154 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Gabi1924g00006 154 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Gabi1924g00006 154 FunFam Ethylene-responsive transcription factor 2 15 75 - -
Gabi1924g00006 154 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1924g00006 Gabi-Chr1924 188824 189288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1924g00006 12 148 AP2-EREBP Transcription Factor Family AT3G23230 52.555 1.03e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi1924g00006 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1924g00006 - - gsj:114381985 189.119