Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1924g00005 ATGACTTCCCCTTTCTTTCAGAACCCAGATTGTGAGATGTTGCAGGAGCCTTCTGACATTTTGTTCGAATCATTTTCAAGCAGTGGTGTTCGTGACTCTATCTATGATTCTCTTTCCTTCGATATGATCGACTTCTCCATGGATTCACAGTCACCAACCGAAGGAAACGACAACGGACCGAACCAATTGGTGGTTAAGTCCGAAGCTAAGGAAGTGAAGACTAAGGAAAGGTCGTATATAGGTGTAAGGAAAAGGCCATGGGGAAAATTTGCAGCAGAGATCAGAGATACAACGAGGAATGGCACAAGGGTTTGGCTTGGAACCTTTGATAGTGCAGAATCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAAAGCTGCACTCAATTTTCCAGTCAAAAGGGTCGAAGAATCTTTACAAGAAATCGAATATGGTTGCTTGCAAGGTTGTTCACCTGCACTTGCACTCAAGAAGTGGCACTGCATCCAAAGAAATTTGTCATCAAAAGCTGGGAAGTGTAAAAGGAAACAGGAATCAGAGTCACCGCCCTCAAGTGTGGTGGTGCTAGAGGACTTGGGAGTTGAATATCTAGAGCAACTTTTAAGCATATGCGATCAAAGTGCAAGCCCTAGCTGCTTCGAATAA 660 0.4394 MTSPFFQNPDCEMLQEPSDILFESFSSSGVRDSIYDSLSFDMIDFSMDSQSPTEGNDNGPNQLVVKSEAKEVKTKERSYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFDSAESAALAYDQAAFSMRGHKAALNFPVKRVEESLQEIEYGCLQGCSPALALKKWHCIQRNLSSKAGKCKRKQESESPPSSVVVLEDLGVEYLEQLLSICDQSASPSCFE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1924g00005 219 FunFam Ethylene-responsive transcription factor 2 77 138 - -
Gabi1924g00005 219 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Gabi1924g00005 219 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Gabi1924g00005 219 Pfam AP2 domain 79 129 IPR001471 GO:0003700|GO:0006355
Gabi1924g00005 219 ProSiteProfiles AP2/ERF domain profile. 78 136 IPR001471 GO:0003700|GO:0006355
Gabi1924g00005 219 PANTHER DNA-BINDING DOMAIN 57 210 IPR044808 GO:0003700|GO:0009873
Gabi1924g00005 219 SMART rav1_2 78 142 IPR001471 GO:0003700|GO:0006355
Gabi1924g00005 219 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Gabi1924g00005 219 CDD AP2 79 137 IPR001471 GO:0003700|GO:0006355
Gabi1924g00005 219 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1924g00005 Gabi-Chr1924 163370 164029 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1924g00005 57 214 AP2-EREBP Transcription Factor Family AT3G23240 54.430 8.48e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1924g00005 AP2 5.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1924g00005 K14516 - gmx:100527364 300.827