Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1924g00004 ATGTCATCTCCTTTCTTTCAGTACCAAGATTGTGAGACGTTGAAGGAGCCTTCTGACATTTTGTTCGAATCATGTTCAAGCAATGGTGTTCGTGACTCTATCTATGATTCTCTTTCCTTCGATATGGTTGACTTCTCCATGGATTCACAGTCACCAATCAAAGGAAACGACAACGAGCAAAAGCGATTGGTGGTTAAGTCTGAAGGTAAACAAGAGCACACTGAGGAAATGTCGTATATAGGTGTAAGGAAAAGGCCATGGGGAAAATTTGCAGCAGAGATTAGAGATACAACGAGGAATGGCACAAGGGTTTGGCTTGGAACCTTTGATAGTGCAGAGTCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAACGCTGCACTCAATTTTCCTGTCAAAAGGGTCAAAGAATCTTTGCAAGAAATCGAATATGGTTGCTTGCAAGGATGTTCACCCGCACTTGCACTCAAGGAGTGGCACTGCATCCAAAGAAAATTGTCATCAAAAGCTGGAAAGTATAAAGAGAAACAGGAATCAGAGGAACCAATACCAAACGTGATGGTGCTAGAGGATTTGGGAATTGAATATCTTGAGCACCTTCTAAGCATATCCGGTCAAAGTGCAAGCCCCAGCAATTTCGAATAA 660 0.4258 MSSPFFQYQDCETLKEPSDILFESCSSNGVRDSIYDSLSFDMVDFSMDSQSPIKGNDNEQKRLVVKSEGKQEHTEEMSYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFDSAESAALAYDQAAFSMRGHNAALNFPVKRVKESLQEIEYGCLQGCSPALALKEWHCIQRKLSSKAGKYKEKQESEEPIPNVMVLEDLGIEYLEHLLSISGQSASPSNFE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1924g00004 219 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700|GO:0006355
Gabi1924g00004 219 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Gabi1924g00004 219 FunFam Ethylene-responsive transcription factor 2 77 138 - -
Gabi1924g00004 219 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Gabi1924g00004 219 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Gabi1924g00004 219 PANTHER DNA-BINDING DOMAIN 61 207 IPR044808 GO:0003700|GO:0009873
Gabi1924g00004 219 SMART rav1_2 78 142 IPR001471 GO:0003700|GO:0006355
Gabi1924g00004 219 Pfam AP2 domain 79 129 IPR001471 GO:0003700|GO:0006355
Gabi1924g00004 219 CDD AP2 79 137 IPR001471 GO:0003700|GO:0006355
Gabi1924g00004 219 ProSiteProfiles AP2/ERF domain profile. 78 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1924g00004 Gabi-Chr1924 97895 98554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1924g00004 57 214 AP2-EREBP Transcription Factor Family AT3G23240 55.063 3.09e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi1924g00004 AP2 4.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1924g00004 K14516 - gmx:100527364 288.5