Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1924g00002 ATGCCAAAAATGACTTCCCCTTTCTTTCAGACTAACCCAGATTGTGAGATGTTGCAGGAGCCTTCTGACAATTTAATCGAATCATTTTCAAGCAGTGGTGTTCGTGACACTATCTATGATTCTCTTTCCTTCGATATGATCAACTTCTCCATGGATTCACAGACACCAATCAAAGGAGACAACAACGAGCAAAAGCAATTGGAGGTTAAGTCTGAAGGTAAACAACAGCACACTAAGAAAATGTCGTATATAGGTGTAAGGAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGATACAACGAGGAATGGCACAAGGGTTTGGCTTGGAACCTTTGATACTGCAGAGTCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAAAGCTGCACTCAATTTTCCAGTCAAAAGGGTCAAAGAATCTTTGCAAGAAATCGAATATGGTTGCTTGCAAGGATGTTCGCCTGCACTTGCACTCAAGGAGTGGAATTGCATCCAAAGAAAATTGTCATCAAAAGCTGGAAAGTGTAAAGGGAAACAGGAATCAGAAGCAACATCACCAAGTGTGGTAGTGTTTGAGGATTTGGGAGTTGAATATCTAGAACAACTTCTAAGCATATCCGATCAAGGTGCAAGCCCTAGCTACTTCAAATAA 672 0.4152 MPKMTSPFFQTNPDCEMLQEPSDNLIESFSSSGVRDTIYDSLSFDMINFSMDSQTPIKGDNNEQKQLEVKSEGKQQHTKKMSYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFDTAESAALAYDQAAFSMRGHKAALNFPVKRVKESLQEIEYGCLQGCSPALALKEWNCIQRKLSSKAGKCKGKQESEATSPSVVVFEDLGVEYLEQLLSISDQGASPSYFK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1924g00002 223 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Gabi1924g00002 223 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Gabi1924g00002 223 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Gabi1924g00002 223 Pfam AP2 domain 83 133 IPR001471 GO:0003700|GO:0006355
Gabi1924g00002 223 PANTHER DNA-BINDING DOMAIN 62 211 IPR044808 GO:0003700|GO:0009873
Gabi1924g00002 223 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
Gabi1924g00002 223 FunFam Ethylene-responsive transcription factor 2 81 142 - -
Gabi1924g00002 223 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Gabi1924g00002 223 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Gabi1924g00002 223 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1924g00002 Gabi-Chr1924 30801 31472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1924g00002 54 218 AP2-EREBP Transcription Factor Family AT3G23240 53.333 3.35e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1924g00002 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1924g00002 K14516 - gmx:100527364 295.434