Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1924g00001 ATGTCAGCGTTTGAGGCCAATAAATTAAGGCAAAGAGTGGAAGATGAAGAGGCCACAGAAAGCATATGCCCAAAAATGTCTTCCCCTTTCTTTCAGAACCAAGATTGTGAGATTTTGCAGGAGCCTTCTGACATTTTGTTCGAATCATGTTCAAGCAATGGTGTTCGTGACTCTATCTATGATTCTCTTTCCTTCGATATGGTTGACTTCTCCATGGATTCACAGTCACCAATCAAAGGAAACCACAACGAGCGAAAGCAATTGGTGGTTAAGTCTGAAGGTAAACAAGAGCACACTGAGAAAATGTCGTATATAGGTGTAAGGAAAAGGCCATGGGGAAAATTTGCAGCAGAGATTAGAGATACAACGAGGAATGGCACAAGGGTTTGGCTTGGAACCTTTGATAGTGCTGAGTCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTCTACTCAATTTTCCGGTCAAAAAAGTCAAAAAATCTTTGCAAGAAATTGAATATGGTTGCTTGCAAGGGTGTTCTCCTGCACTTGCACTCAAGGAGTGGAATTGCATGCAGAGAAAATCGTCATCAAAAGCTGGAAAGTGTAAAGAGAAACAGGAATCAGAGGAACCAAAACCAAATGTGATGGTGCTAGAGGATTTGGGAATTGAATATCTTGAGCACCTTCTAAGCATATCCGGTCAAAGTGCAAGCCATAGCAATTTCGAATAA 735 0.415 MSAFEANKLRQRVEDEEATESICPKMSSPFFQNQDCEILQEPSDILFESCSSNGVRDSIYDSLSFDMVDFSMDSQSPIKGNHNERKQLVVKSEGKQEHTEKMSYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFDSAESAALAYDQAAFSMRGHNALLNFPVKKVKKSLQEIEYGCLQGCSPALALKEWNCMQRKSSSKAGKCKEKQESEEPKPNVMVLEDLGIEYLEHLLSISGQSASHSNFE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1924g00001 244 SUPERFAMILY DNA-binding domain 104 162 IPR016177 GO:0003677
Gabi1924g00001 244 Pfam AP2 domain 104 154 IPR001471 GO:0003700|GO:0006355
Gabi1924g00001 244 CDD AP2 104 162 IPR001471 GO:0003700|GO:0006355
Gabi1924g00001 244 FunFam Ethylene-responsive transcription factor 2 102 163 - -
Gabi1924g00001 244 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
Gabi1924g00001 244 Gene3D AP2/ERF domain 103 163 IPR036955 GO:0003700|GO:0006355
Gabi1924g00001 244 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Gabi1924g00001 244 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Gabi1924g00001 244 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Gabi1924g00001 244 PANTHER DNA-BINDING DOMAIN 77 235 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1924g00001 Gabi-Chr1924 3019 3753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1924g00001 103 239 AP2-EREBP Transcription Factor Family AT3G23240 58.394 7.46e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1924g00001 AP2 5.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1924g00001 K14516 - gmx:100527364 294.278