Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1920g00023 ATGGGAGAAAGGTCAAGAAATGAGGTTTCTCCTCAGCTGCTGGATTTGATCTCAAATGAGAGAGAGTGGCAGATGAACAGAAACGAAGGAAAGTCTTCAGAGGAGAGGAAGCTTGAGTTGAGGCTTGGTCCACCTGGTGAGGACTGGTCTCTCAATGACAAAATGAAGAAAGGAAACACAGAAGAAAGAGATGAGTCTCTACTCTCTCTTGGTTACCTCTCTACCTTGCCTCATGCAATCATGAGCTCCAACAATGGATTCCAAAGCCATAATATTTCTACCTCTGACACCCCTTGTGGGGCTATGTTGCCCTGTCCATGGGCTTCCACAGGCTACCAACAGGGTAACAAAGCTTCATCATTTCTTCAGTTTCCCTCAAGCCAGCCTGTGATGGGAAAAGATTCTTCCCAAACCTGTTGCCCTAAGGTGGTAGAGTTGCAGAATGGTGATAAGAAAGTTTTCTCTCCCTCTTCTGCAAATACAGCTGTTCCCAACAGCTCTCAGAAAAGAACTGCTCCAGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCGTTCAGGAAGAACCTTGCAAGCAGCAGCACTTCAAAGCCACCTCCTGAGTGCCAGCATCAGCATGACAAGGTTGCTGGTAAAAAATCTGTTGAAAACTATGGTAAAGGTTTATTTGTCAAGATCAACATGGATGGAGTTCCAATTGGGAGGAAAGTGGACCTCAATGCTTATGACAGCTATGAAAATCTCTCCTCTGCAGTTGACGAGCTCTTCAGTGGCCTCCTTGCCGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAAGAGGACGAGAAAACTATTACGGGTTTAATGGATGGAAGTGGGGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTCGTATCAACAGTGAAGAGGCTGCGGGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCGTGGCAGTAAGCAAGACAAGGTATCACTTGACTCAGCAATGAAATGA 1041 0.4621 MGERSRNEVSPQLLDLISNEREWQMNRNEGKSSEERKLELRLGPPGEDWSLNDKMKKGNTEERDESLLSLGYLSTLPHAIMSSNNGFQSHNISTSDTPCGAMLPCPWASTGYQQGNKASSFLQFPSSQPVMGKDSSQTCCPKVVELQNGDKKVFSPSSANTAVPNSSQKRTAPGPVVGWPPIRSFRKNLASSSTSKPPPECQHQHDKVAGKKSVENYGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFSGLLAAQRDSSAGGVHNKQEDEKTITGLMDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTRGSKQDKVSLDSAMK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1920g00023 346 MobiDBLite consensus disorder prediction 151 210 - -
Gabi1920g00023 346 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 327 IPR003311 GO:0005634|GO:0006355
Gabi1920g00023 346 Pfam AUX/IAA family 38 329 IPR033389 -
Gabi1920g00023 346 Gene3D - 215 336 - -
Gabi1920g00023 346 MobiDBLite consensus disorder prediction 22 43 - -
Gabi1920g00023 346 FunFam Auxin-responsive protein 215 336 - -
Gabi1920g00023 346 MobiDBLite consensus disorder prediction 1 62 - -
Gabi1920g00023 346 ProSiteProfiles PB1 domain profile. 220 324 IPR000270 GO:0005515
Gabi1920g00023 346 MobiDBLite consensus disorder prediction 151 172 - -
Gabi1920g00023 346 SUPERFAMILY CAD & PB1 domains 216 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1920g00023 Gabi-Chr1920 242033 246125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1920g00023 224 335 B3 DNA Binding Superfamily AT4G23980 33.036 8.50e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi1920g00023 AUX_IAA 1.1e-71 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1920g00023 K14484 - qsa:O6P43_018220 478.404