Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1920g00012 ATGACTCGGCGGTGCTCTCACTGTAGCAACAACGGCCACAACTCGAGGACGTGCCCGTCACGCACTGGTGGTGGTGGTGGTGGAGGAGTGAAGCTTTTCGGGGTGAGGCTGACGGATGGATCAATCATAAAGAAGAGCGCAAGCATGGGAAACCTCAACCTCTCTGCTCTTCACCATTGTTCTGTCGCTGCTGCCTCATCTCCCAATCCCGGATCCCCGTGCTCCGACCCGCCCCATGAGCCTGACGGCTACTTATCCGATGACCCGGCCCATGCCTCCACCGTCGCTAATCGCCGTGGAGAAAGAAAGAAAGGTGTTCCATGGACTGAAGAAGAACATCGGATGTTCTTAGTTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTTTGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTACTTTATCCGGCAGAGTAATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCAGATATGTCTTCAGATCCACCTTCGGTGCCAGAAGAACAAGTACTACTTCCACCTTCTGAGAACTCACAGCCTTGTAGTGGAAAATCACAGCCTTCATTAAATCTCTCTCTGAAGTCTGAATTTGAACCCATGGAAACTACTTCTCAAGAAAATGTGGAAGAGCCCAATGAAACTATGACAGGGTCAAACAGATTGACACCAATGGCTCCTGGATTCTTCCCAGCTTATATTCCTGTCCCATTTTCCATATGGCCATCAATTGCAGATCCCTTTGGAGAAGTTAACGGAGGAGAGACATCTCATCATCAGGTTCTCAAGCCAATCCCGGTCATTCCCAAGGAACCTGTCAATGTTGATGAACTTGTGGGAATGTCTCATTTAAGCATTGGGGAAACACAGGTACTTGATAGAGAGCCTTCCCCACTTTCCTTGAAGTTGTTAGGAGAGCCCTCAAGGCAGTCAGCATTCCATGCAAACGCTCCAGTTGGTGGTTCGGATTTGAACAGTGGCAAGAACAGTGCAATTCAAGCGGTTTGA 1053 0.4948 MTRRCSHCSNNGHNSRTCPSRTGGGGGGGVKLFGVRLTDGSIIKKSASMGNLNLSALHHCSVAAASSPNPGSPCSDPPHEPDGYLSDDPAHASTVANRRGERKKGVPWTEEEHRMFLVGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMVPDMSSDPPSVPEEQVLLPPSENSQPCSGKSQPSLNLSLKSEFEPMETTSQENVEEPNETMTGSNRLTPMAPGFFPAYIPVPFSIWPSIADPFGEVNGGETSHHQVLKPIPVIPKEPVNVDELVGMSHLSIGETQVLDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLNSGKNSAIQAV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1920g00012 350 PANTHER TRANSCRIPTION FACTOR KUA1 3 252 - -
Gabi1920g00012 350 MobiDBLite consensus disorder prediction 65 106 - -
Gabi1920g00012 350 FunFam transcription factor MYB1R1 106 157 - -
Gabi1920g00012 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 156 IPR017930 -
Gabi1920g00012 350 MobiDBLite consensus disorder prediction 330 350 - -
Gabi1920g00012 350 SUPERFAMILY Homeodomain-like 102 157 IPR009057 -
Gabi1920g00012 350 Pfam Myb-like DNA-binding domain 107 152 IPR001005 -
Gabi1920g00012 350 MobiDBLite consensus disorder prediction 1 21 - -
Gabi1920g00012 350 ProSiteProfiles Myb-like domain profile. 100 152 IPR001005 -
Gabi1920g00012 350 CDD SANT 107 152 IPR001005 -
Gabi1920g00012 350 Gene3D - 108 157 - -
Gabi1920g00012 350 MobiDBLite consensus disorder prediction 169 235 - -
Gabi1920g00012 350 NCBIfam myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Gabi1920g00012 350 SMART sant 104 154 IPR001005 -
Gabi1920g00012 350 MobiDBLite consensus disorder prediction 187 235 - -
Gabi1920g00012 350 MobiDBLite consensus disorder prediction 1 25 - -
Gabi1920g00012 350 ProSiteProfiles SANT domain profile. 108 156 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1920g00012 Gabi-Chr1920 179397 183031 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi1920g00012 Myb_DNA-binding 5.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1920g00012 - - gmx:778036 579.326