Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1920g00007 ATGGCAATGTCCTGCAAGGATGGTAAAGCAGGATTGGATAATGGCAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGACTGCCCCAAACCCAGTTCCATTCGCCGCCAGCAGCTTATTCGCGAGTGCCCAATACTCTCAAACATTGAGCCAAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGAAAAGAGGCTTCGCGGTTGCAAGCTGTAAATAGGAAGCTGACAGCCATGAACAAGTTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAATTGGTGTACGAAAATGGCTACTTTCGTCAACATACCCAAAATAATACGCTTGCAACCAAAGACACAAGCTGTGAGTCAGCCGTGACTAGTGGTCAGCGCAGTTTGACAACCCAGCATCCTCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCCGCAAGAGCCTGTGGCCTAGTGGGTCTAGAACCTACAAGGGTTGCAGAAATCCTCAAAGATCGGCCTTCGTGGTTCCGAGATTGCCGAGCTGTTGATGTTCTGAATGTGCTGCCCACTGCAAATGGTGGAACTATAGAGCTGCTTTATATGCAGCTATATGCACCAACCACGTTGGCACCTGCTCGGGACTTCTGGTTGTTGCGCTACACATCTGTCCTAGAAGATGGAAGCCTAGTGATCTGTGAGCGGTCTCTTAAAAATACACAAAATGGTCCAAGCATGCCTCCTGTGCAGCACTTTGTTAGAGCAGAGACGCTGCCTAGCGGGTACTTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTGGAGCCATGGAGTGTTCCTGAAGTATTGCGTCCACTGTATGAATCATCAACAGTGCTGGCTCAGAAGACAACAATGGTGGCCCTACGTCAGCTAAGGCAGATATCGCATGAAGTTTCTCAGTCTAATGTCACTGGGTGGGGTAGACGACCGGCAGCTCTTCGGGCACTTGGCCAGAGACTGAGCCGGGGTTTCAATGAGGCAGTCAATGGGTTTACTGATGAGGGATGGTCAATGATTGGCAATGGTGCTGATGATGTTACAGTTCTAGTGAATTCATCACCTGACAAGTTAATGGGTCTTAATCTTTCCTTTGCCAATGGATTTCCATCTGTCAGCAATGCAGTCTTATGTGCCAAAGCTTCCATGCTATTACAGAATGTGCCTCCAGCCATTCTATTAAGGTTCCTACGGGAGCATCGATCAGAATGGGCGGACAACAACATGGATGCTTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTAGCTTTTCAGGATCTCGGGTTGGAAATTATGGGGGTCAAGTTATTCTTCCTCTAGCCCACACTATCGAGCATGAGGAGTTTCTGGAAGTCATTAAATTGGAAGGAATTGCTCATTCTCCTGAAGACACAATAATGCCCAGAGAAGTTTTTCTCTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTCGGCACCTGTGCTGAACTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGACGCCCCCCTTCTGCCTTCTGGATTTCGCATCATTCCTCTTGATTCTGGAAAGGAAGCGTCCAACCCAAATCGCACCCTTGACCTTGCATCTGCCCTTGACATTGGCCCCACTGGAAACAGAGCATCGAATGATTATTCTGGAAATTCTGGCTGTATGAGATCGGTGATGACAATTGCATTCGAATTTGCATTTGAAAGTCATATGCAAGAGCATGTAGCATCCATGGCACGACAATACGTTCGTAGCATTATATCATCTGTCCAAAGGGTGGCATTAGCGCTTTCACCTTCTCATTTGAATTCACAAGCTGGGCTTAGGACACCACTAGGTACTCCTGAAGCGCAAACACTTGCTCGTTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTCGAGCTACTTAAATCTAATAGCGAGGGGAACGAAACTTTACTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAAGCATTGCCCGTGTTCACTTTCGCAAACCAGGCAGGGCTTGACATGCTGGAGACTACCTTAGTTGCTTTGCAAGACATAGCTTTAGAGAAAATATTTGACGATCATGGTCGAAAGATTCTCTGCTCAGAGTTTCCCCAAATTATTCAACAGGGTTTTGCCTGCCTTCAAGGTGGTATGTGTCTCTCAAGCATGGGGCGACCGATCTCATATGAAAGAGTAGTGGCTTGGAAGGTGCTGAACGAAGAAGAGAATGCTCATTGTATTTGCTTTACGTTTATGAACTGGTCTTTTGTTTGA 2511 0.4679 MAMSCKDGKAGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNNTLATKDTSCESAVTSGQRSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAETLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMVALRQLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEAVNGFTDEGWSMIGNGADDVTVLVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSFSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDTIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASNPNRTLDLASALDIGPTGNRASNDYSGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLNSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNSEGNETLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDIALEKIFDDHGRKILCSEFPQIIQQGFACLQGGMCLSSMGRPISYERVVAWKVLNEEENAHCICFTFMNWSFV 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1920g00007 836 CDD bZIP 68 107 - -
Gabi1920g00007 836 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Gabi1920g00007 836 Gene3D - 194 372 IPR023393 -
Gabi1920g00007 836 Coils Coil 71 112 - -
Gabi1920g00007 836 Pfam MEKHLA domain 693 835 IPR013978 -
Gabi1920g00007 836 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Gabi1920g00007 836 Gene3D - 11 82 - -
Gabi1920g00007 836 SMART HOX_1 13 79 IPR001356 GO:0003677
Gabi1920g00007 836 SUPERFAMILY Bet v1-like 159 348 - -
Gabi1920g00007 836 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
Gabi1920g00007 836 CDD START_ArGLABRA2_like 154 369 - -
Gabi1920g00007 836 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Gabi1920g00007 836 MobiDBLite consensus disorder prediction 128 154 - -
Gabi1920g00007 836 MobiDBLite consensus disorder prediction 128 149 - -
Gabi1920g00007 836 SMART START_1 159 369 IPR002913 GO:0008289
Gabi1920g00007 836 SUPERFAMILY Homeodomain-like 15 79 IPR009057 -
Gabi1920g00007 836 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Gabi1920g00007 836 CDD homeodomain 16 76 IPR001356 GO:0003677
Gabi1920g00007 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 836 IPR044830 GO:0003700
Gabi1920g00007 836 Pfam START domain 160 368 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1920g00007 Gabi-Chr1920 64646 73056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1920g00007 1 788 Homeobox Transcription Factor Family AT1G52150 86.979 0.0 1435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi1920g00007 START 3.7e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1920g00007 K09338 - zju:107428556 1596.25