Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1919g00002 ATGGCAGATTATTCCAAAAACACAAAATGGAAGTACCATGTTTTCTTGAGTTTTAGGGGAGAAGACACACGCTTGGGTTTCACCGACCACTTATATGCAGCTTTGGTGCGAAAGAGTATCATAACTTTTAGAGATGATGAAGAACTTGCCAGAGGTGAAGTCATCTCTCATAAACTCCTCCTTGCAATTGAGGAATCTCTCTCTGCAATTGTCATAATCTCCAAAAACTATGCTTCCTCGTCTTGGTGTTTGGATGAGTTAGTTAAGATTCTTGAATCCAAACATGTGCTGGGACAAGATGTGTTTCCAGTCTTCTATGGTGTGGATCCCTCTGATGTAAGGAATCAGAGGGGAAGTTTTGCAGAAGCTTTTAGAAAACATGAAGAAAAATTTATAGAAAACAAAGAGAAGGTGCAAAAATGGAGAGATGCATTAAAAGAAGTTGCTAACTTGTCAGGGTGGGACTCTAAGGATCAACATGAAACAACTCTCATTGAAGAAGTTGTTGCACAAGTATGGAAGAAACTAGAACCCAAATTCCCTACATATAACGATGGACTAGTTGGAATTGATACAAGATTAGAAGATTTATATTCAACTTTGAAGCTAGGATTGGAGGATGTTCGTTTCATAGGGATATGGGGCATGGGTGGTATAGGTAAAACAACTCTCGCGACTGCTCTTTTCAAGAAAATTAGATGCCATTTTGATGTTAGTTGCTTTGTTGCCAATGTTAGAGAGGTCTCTGGGGAAAGAAACGAAGGTTTCGTGCAGTTACAAAATAAAATTCTTTTTCGTCTAAATATAAAAGGAATGTTAATTGAAACTTCAAGCCAAGGAAAGGACAGCTTAAGAAACCTTTTGTCCAACAAAAAGGTTCTTCTTGTCCTTGATGATGTAAGTTCTAAAAGCCAACTTGAGAATTTGGCTGGAAACCAAGATTGGTTTGGTCCAGGGAGTAGAATTATAGTAACAACTAGGGATAAGCACCTGCTCATATCTCATGTAGTACTGTTTGAGATGTATAAGAGTAAAATCTTAAACGATAATGAATCCCTTCAACTCTTCTGTGAAAAAGCATTTAAAAAAGATGAACCTAGAGAGGATTATTTGGAGTTGTCTAAAAATGTTGTTGAATATGCTGGAGGCCTTCCTCTGGCTCTTGAAGTGTTGGGTTCTTTTCTTTGTGGAAGAAGTATATCTGATTGGGAAGATGCTTTGATTAAGATTAAACAAGTTCCACATGATGATATCCTCAACAAACTTAGAATAAGTTATGACATGCTAGAAGATGAGCACAAGACCATATTTCTAGATATTGCTTGTTTTTTTAAGGGATGGTACAAACATAAAGTGACACAAATATTGGACAATTGCGGCCTTCATCCAACAATTGGATTAAATGTTCTTAGAGAAAAATCACTAGTAACTTACAATGGAAGAGTTATTGGGATGCACGATCTACTTGAAGAAATGGGAAAAACTATAGTTTTTCAAGAATCACCGAATGATCCTGGTAGACGGAGTAGATTGTGGTCTCTAGAGGATACTGATCATGTGCTGAGAAAAAATAAGGGAACGGAAATTGTCCAAGGTATAGTTTTGAAGTCATCACCATCTGAGCCATATGAAGCACATTGGGATCCTGAGGCCTTCTCAAAAATGTGTAATCTTAGATTACTCATTGTATTATGTGATTTGCATCTTCCCCTTGGTCTCAAATGTCTTTCTAGCTCACTAAAAGTGCTTGTATGGTCGGGATATCCATTGAATGCTTTGCCACTTGGAGTTCAACTAGATGAGCTTGTTCACCTACAAATGATCAATAGCAAAGTTAAGCAACTATGGAATGGAACTCAGTATGTTGGAAAGCTGAAAGTGATTGATTTGAGTAATTCCAAAGATCTACGACAAACTCCAAATGTTACTGGAGTTCCATATCTTGAAGAGCTTTATCTTAAAGATTGTACAAAACTTGTTGAAGTTCACCAATCTATCGGACAACACAAAAAGCTCCGGATATTGAGCTTTATAGGATGTGTAAACCTTAAAACCTTTCCAAGTAGATTGGAAATGTGTTCCCTCAAAATGTTTTATCTTTCTGACTGCTCAAAGGTTGAAAGACTTCCGAATTTGGGGGTAAATATGACATGTGTCTCAGTGCTTAATTTAATGAATTGCAAAAATCTTTTTTGCCTGCCAAATACCATTGGTAACTTGAAGTCTCTTAGAATTCTCAACATATCAGGATGCTCAAAAGTTTGTTGCCTGCCAGATAATATAAATCAAAACAAGGCTTTGGAGGATCTTGACTTGAGTGAAACTGCTATTAGCGAATTGGATCTATCAACACTTCAGTTGTGGAATCTCAAAAGGTTATCTTTAAGGGGTTGTAGTGGGCCAGGATCCAACACCAGCAGGGACTTGCATCTTCCTTTTGGGTGGAAATTTAGTTTTACCCCAGCTCCTACAAGCTTAATATTGTCTCCTTATATTGGCTTCAGTCTTTCCTCATTAACTGTTTTGAATTTAAGCTATTGCAATCTCACTGATGAGTCAATTCCTTTACGTCTCTATCGCTTATCATCGTTGGAGAGACTAATTTTAAGTGGGAACAATTTTGTACGCTTTCCTGGTCACTTCATTGCTAGTATTCCGAGGCTTCGCCGTGTTGAATTGGAAGATTGCTCAGAGCTTCGATCTCTGCCTGTGGTTCCACCACATGTTCGCCTGTACTTAGAAGATTCAGCTGCAATGGAAGCTAGTTTAGTAGATCAAGAAAAGCTTTGGAAGCTGTTTGAATCAGATTATGTGTCAGCTTCTGTTCGTTGA 2832 0.3778 MADYSKNTKWKYHVFLSFRGEDTRLGFTDHLYAALVRKSIITFRDDEELARGEVISHKLLLAIEESLSAIVIISKNYASSSWCLDELVKILESKHVLGQDVFPVFYGVDPSDVRNQRGSFAEAFRKHEEKFIENKEKVQKWRDALKEVANLSGWDSKDQHETTLIEEVVAQVWKKLEPKFPTYNDGLVGIDTRLEDLYSTLKLGLEDVRFIGIWGMGGIGKTTLATALFKKIRCHFDVSCFVANVREVSGERNEGFVQLQNKILFRLNIKGMLIETSSQGKDSLRNLLSNKKVLLVLDDVSSKSQLENLAGNQDWFGPGSRIIVTTRDKHLLISHVVLFEMYKSKILNDNESLQLFCEKAFKKDEPREDYLELSKNVVEYAGGLPLALEVLGSFLCGRSISDWEDALIKIKQVPHDDILNKLRISYDMLEDEHKTIFLDIACFFKGWYKHKVTQILDNCGLHPTIGLNVLREKSLVTYNGRVIGMHDLLEEMGKTIVFQESPNDPGRRSRLWSLEDTDHVLRKNKGTEIVQGIVLKSSPSEPYEAHWDPEAFSKMCNLRLLIVLCDLHLPLGLKCLSSSLKVLVWSGYPLNALPLGVQLDELVHLQMINSKVKQLWNGTQYVGKLKVIDLSNSKDLRQTPNVTGVPYLEELYLKDCTKLVEVHQSIGQHKKLRILSFIGCVNLKTFPSRLEMCSLKMFYLSDCSKVERLPNLGVNMTCVSVLNLMNCKNLFCLPNTIGNLKSLRILNISGCSKVCCLPDNINQNKALEDLDLSETAISELDLSTLQLWNLKRLSLRGCSGPGSNTSRDLHLPFGWKFSFTPAPTSLILSPYIGFSLSSLTVLNLSYCNLTDESIPLRLYRLSSLERLILSGNNFVRFPGHFIASIPRLRRVELEDCSELRSLPVVPPHVRLYLEDSAAMEASLVDQEKLWKLFESDYVSASVR 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1919g00002 943 Gene3D Ribonuclease Inhibitor 762 911 IPR032675 -
Gabi1919g00002 943 Gene3D - 177 337 IPR027417 -
Gabi1919g00002 943 Pfam NB-ARC domain 206 412 IPR002182 GO:0043531
Gabi1919g00002 943 Gene3D - 346 430 IPR042197 -
Gabi1919g00002 943 SMART till_3 11 151 IPR000157 GO:0007165
Gabi1919g00002 943 Gene3D - 8 176 IPR035897 -
Gabi1919g00002 943 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 154 IPR035897 -
Gabi1919g00002 943 PRINTS Disease resistance protein signature 381 395 - -
Gabi1919g00002 943 PRINTS Disease resistance protein signature 287 301 - -
Gabi1919g00002 943 PRINTS Disease resistance protein signature 738 754 - -
Gabi1919g00002 943 PRINTS Disease resistance protein signature 210 225 - -
Gabi1919g00002 943 FunFam Disease resistance protein (TIR-NBS-LRR class) 348 430 - -
Gabi1919g00002 943 Pfam TIR domain 11 185 IPR000157 GO:0007165
Gabi1919g00002 943 SUPERFAMILY L domain-like 486 904 - -
Gabi1919g00002 943 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Gabi1919g00002 943 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 178 - -
Gabi1919g00002 943 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 710 IPR044974 GO:0006952
Gabi1919g00002 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 440 IPR027417 -
Gabi1919g00002 943 Gene3D Ribonuclease Inhibitor 546 692 IPR032675 -
Gabi1919g00002 943 Gene3D Ribonuclease Inhibitor 693 761 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1919g00002 Gabi-Chr1919 10855 14642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1919g00002 12 793 WRKY Transcription Factor Family AT4G12020 31.227 8.52e-95 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1919g00002 - - vvo:131658213 1461.05