Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1911g00011 ATGGAGAAACCTTCAGATGATGAACAGAGAAACGTGGAAGGAACCAGTGCCAGCAGTAGTATAAACAACACTCAGCGTCCGAGGAACCCTATTGAGGAATTGGAAATGCTTGCTTACTTGAGTGATACAGAAGAAGAGGAAGATGATGATGATGATGAAGAAGAAAGTGAAGAAGATGGTAGTGATGAAGCAGAAGAAGTTATGAACGACGATGAGGCCAATGATGGTTTTGCTATAGCCAGTGTTGATAGAGAAATTATTATGCCAACATTTGAACCAAAGGTTTCAGATAACTCCATACAAGCAACTCTTTCTGATCCCGACGTGCTTGATTGCTACATTTGTTCTGAACCTTTGACTATTCCTGTTTTCCAGTGCATCAATGGGCATATTGCTTGCTCCTTATGTTGTGCCAAACTTTTGTATAAGTGTCCCTTTTGCTCAATGCGTATTGACCACAGCCGTTGCCTTGCTATAGAGAAAGTACTAGTGTCACTTCAAATAGCATGCCAAAATGCAACATATGGTTGTAATGAGATATTAAGATACAGCCAAAAATATGAGCATGAGAAGACATGTATCTATGTACCATGTTCATGTCTAGGTTGCAACTTTGTTGCCAAGTCAAGCGACTTATATCTCCACTTCAAGGAAAATCATATGAATGCTAAAACATCATTTAAATATGATGAATTTTTCTCTGTCTTGTTAAGTCATGATGAGAACATCGTTGTTCTTCAAGAGCAAATTGATGGCAAGCTGTTTGTTCTCAAAAATAAGGCATCAGAGAACCAAGGAAATGCAGTGACTATTTATCACATCGGGCCTAATTCACCAAACCCAATTTCTTATTATGAAATCAAGGCTAGGTCTATGGTGGAAAACAAATCTGTGCAATTCCTAGCTTCTGCCCAAAACATTCAAGGCTTCACATTTGGCAGTGCTTCATCATCACCAAGGTCTCTTTTGATTCCATTGGATTTTTTTAACTCTCATGGACGGCTCGTGCTGGAAATTTGCATAAATTTATATCCTATAAAGCTGAAAGAAGTCCATAGGTGCTAG 1065 0.3878 MEKPSDDEQRNVEGTSASSSINNTQRPRNPIEELEMLAYLSDTEEEEDDDDDEEESEEDGSDEAEEVMNDDEANDGFAIASVDREIIMPTFEPKVSDNSIQATLSDPDVLDCYICSEPLTIPVFQCINGHIACSLCCAKLLYKCPFCSMRIDHSRCLAIEKVLVSLQIACQNATYGCNEILRYSQKYEHEKTCIYVPCSCLGCNFVAKSSDLYLHFKENHMNAKTSFKYDEFFSVLLSHDENIVVLQEQIDGKLFVLKNKASENQGNAVTIYHIGPNSPNPISYYEIKARSMVENKSVQFLASAQNIQGFTFGSASSSPRSLLIPLDFFNSHGRLVLEICINLYPIKLKEVHRC 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1911g00011 354 MobiDBLite consensus disorder prediction 1 74 - -
Gabi1911g00011 354 MobiDBLite consensus disorder prediction 38 72 - -
Gabi1911g00011 354 SUPERFAMILY TRAF domain-like 165 280 - -
Gabi1911g00011 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 216 IPR013083 -
Gabi1911g00011 354 Pfam Seven in absentia protein family 155 270 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gabi1911g00011 354 CDD RING-HC_SIAHs 110 148 - -
Gabi1911g00011 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 54 344 IPR044286 -
Gabi1911g00011 354 ProSiteProfiles Zinc finger SIAH-type profile. 165 221 IPR013010 GO:0008270
Gabi1911g00011 354 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1911g00011 Gabi-Chr1911 190405 201058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1911g00011 80 220 C3H Transcription Factor Family AT2G41980 30.719 3.89e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1911g00011 K04506 - cave:132183012 233.417