Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1910g00003 ATGGGAAGAGGGAAAGTGGAGCTGAACAGAATTGAGAACCCAACAAGTAGGCAAGTTACCTTCTCAAAGAGAAGAAATGGACTAATCAAGAAGGCCTTCGAGCTCTCCATTTTGTGTGATGCTGAAGTTGCCCTTGTTGTTTTCTCTTCATCTGGAAAGGGTTACCAATTTGCTAGCCACGACATGCATAGGACCATTTCGAGGTATCGTTGTCATGTTGGAGTGCCCCAGTTAAATGTCTATCACATGACAACTGTAGAGGCTTGGAGGACTGAAATTGATGAGCTAAGGAGATCGGTAGGCAACATGGAAGCAAGACTGAAGCATTTAGCAGGAGAGGATCTGTCAGCACTAGGCTTGAAAGAATTGAATCAACTAGAACGACAATTGAGTACTGGAATTCAACGCATCAACTCTAAAATGAGACACGTCATTGCTGAGAATAAGAAAATGCTTAATAAAAGGATTAGAGTCCTAAAAGAGGATAACACTCATCTTCAGAAAAAACTGCATGAATTGGAAGATCACAGTTCGAGTTCCAGAACATTGGAATTACTTCGTTTTTGTAACTTGTTTGGATGTCTTAGTACTCTGGATTGTGTTGCAGGATTGCTCAAGATTGAACTTTGA 630 0.4095 MGRGKVELNRIENPTSRQVTFSKRRNGLIKKAFELSILCDAEVALVVFSSSGKGYQFASHDMHRTISRYRCHVGVPQLNVYHMTTVEAWRTEIDELRRSVGNMEARLKHLAGEDLSALGLKELNQLERQLSTGIQRINSKMRHVIAENKKMLNKRIRVLKEDNTHLQKKLHELEDHSSSSRTLELLRFCNLFGCLSTLDCVAGLLKIEL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1910g00003 209 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Gabi1910g00003 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Gabi1910g00003 209 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Gabi1910g00003 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi1910g00003 209 Coils Coil 86 113 - -
Gabi1910g00003 209 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi1910g00003 209 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi1910g00003 209 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Gabi1910g00003 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi1910g00003 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi1910g00003 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi1910g00003 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi1910g00003 209 Coils Coil 149 176 - -
Gabi1910g00003 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1910g00003 Gabi-Chr1910 14434 17302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1910g00003 1 172 MADS-box Gene Family AT3G58780 43.678 1.56e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi1910g00003 K-box 5.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1910g00003 K09264 - qsu:112006468 249.595