Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1908g00001 GTTGTCAACTATTGGCTAGAAAAGGGAATATCTGGATTTATAGTATATAAATTTCGACTTAGGAGACTTGAAGGGCAGTCTACATTAACCACTAATCAGGTTTATTTCACTCGTGGACCCATACCTCAGTCATCTGATCAAATAAAAGGGTTGGTATGTAAGGATATCACTGGAGGTCAGGAACATCCACCCATTCCTGCTACGAATTTGGTTGATGACCCCCCTGTTTCACCCACAGGTTTCACATATTATAAGTCCGTCAAGGTTGCAAATAATGTGACGGTTCCCAAAAATGCTACTGGGTGCAAATGCAAAGGCTTTTGTATTGATCCGAAAACTTGTGAATGTGCGTTGCTTAATGGCTCAGATTTTCCCTATGTATCTCGGGATGGTGGCAGGTTAGTTGAAGCCAAAGATGTAGTTTTTGAATGTGGCCCCAAATGTGGTTGTGGTCCTGGTTGTGTGAACCGAACTTCTCAAAGAGGACTTAGATATCGTTTGGAGGTTTTCCGTACTGCAAAGAAAGGATGGGCCGTTAGAACTTGGGATTTTATACCTTCTGGAGCCCCAGTTTGTGAGTACACAGGAATACTTGCTAGGACGGAAGATATGGAAAGTGTATTGGAAAACAATTATATTTTTGACATAGATTGCTTGCAAACAATCAAGGGGCTTGGTGGAAGAGAGAGGCGGTCAAATAATGTAGCAGTTCCTGCAAATCTTTTGGACAAATGCGATGACCAAGGTTCTGAAAGTGTGCCGGAGTTTTGTATTGATGCAGGATCTACTGGAAATATTGCTAGGTTTATAAACCATTGTTGCGAGCCTAATCTGTTTGTTCAATGTGTTTTGAGCACACACCATGATTTGAAATTGGCTCGAGTAGTGTTGTTTTCTTCCGACAATATATCCCCTTTGCAGGAGCTGACATATGACTATGGCTATGCGCTTGATAGTGTCTTTGACTCCAATGGGAAGATAAAGCAAATGCCATGCTACTGTGGAGCCCCAGGCTGCAGGAAGCGATTGTTCTAA 1035 0.4222 VVNYWLEKGISGFIVYKFRLRRLEGQSTLTTNQVYFTRGPIPQSSDQIKGLVCKDITGGQEHPPIPATNLVDDPPVSPTGFTYYKSVKVANNVTVPKNATGCKCKGFCIDPKTCECALLNGSDFPYVSRDGGRLVEAKDVVFECGPKCGCGPGCVNRTSQRGLRYRLEVFRTAKKGWAVRTWDFIPSGAPVCEYTGILARTEDMESVLENNYIFDIDCLQTIKGLGGRERRSNNVAVPANLLDKCDDQGSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLKLARVVLFSSDNISPLQELTYDYGYALDSVFDSNGKIKQMPCYCGAPGCRKRLF 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1908g00001 344 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 336 - -
Gabi1908g00001 344 Pfam SET domain 176 314 IPR001214 GO:0005515
Gabi1908g00001 344 Gene3D SET domain 45 344 IPR046341 -
Gabi1908g00001 344 ProSiteProfiles Pre-SET domain profile. 100 162 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1908g00001 344 Gene3D - 1 38 IPR036987 -
Gabi1908g00001 344 SUPERFAMILY PUA domain-like 1 56 IPR015947 -
Gabi1908g00001 344 Pfam Pre-SET motif 57 157 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1908g00001 344 SMART PostSET_3 328 344 IPR003616 -
Gabi1908g00001 344 ProSiteProfiles YDG domain profile. 1 22 IPR003105 -
Gabi1908g00001 344 ProSiteProfiles SET domain profile. 165 314 IPR001214 GO:0005515
Gabi1908g00001 344 SMART set_7 165 320 IPR001214 GO:0005515
Gabi1908g00001 344 ProSiteProfiles Post-SET domain profile. 328 344 IPR003616 -
Gabi1908g00001 344 SMART preset_2 53 149 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1908g00001 344 SUPERFAMILY SET domain 51 321 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1908g00001 Gabi-Chr1908 1521 9440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1908g00001 1 344 EF-hand Containing Proteins AT5G13960 64.841 3.13e-170 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi1908g00001 SET 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1908g00001 K11420 - gmx:100796701 605.905