Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi1907g00021 | ATGAGAGAGGGGTTGAGATCTCGGACTCGATCGGGGAAGGTTTCTGGTGGCGGGGGAGTTGTTCACAACGAAAGCGGTGATGTGAAGAATGAAGCTTTTGATTTGGGTGGCGAGGGTTTAGGGGCACCTGACTTGACGATTGAGAAGAAGGACGCTGTTGAACATGCAGTAAAAGAAGAATGTGGCTTGGATTTGGATGTGAGTACGAGTGGAAATGTTGACTTAGCCGAGAATGGGAAAGATAGGAGTACTTTTAGTGGTGTGGCTAACGTTTTAGAAGCTGATGTTGACATGGAGGAGAAGAAGGAACAAGGGTCAAATGATGGAGTGTTGATTGGTGGTCGGGTATTGCGCTCAAGGTCGAAGAGGGGTGATTCTAAAAAAGGTTTTAACGTAGAGAATGGTGGTGTCATTTCCGGAAATAATAGAGGACAAGATAGGTTTGAGAGGGTAGAAGTTAAGACGGAATATGAAGAAGTTGATGAATTAGTTACCGAGGGTTGTGAGAATGAAAGGGTTGGGGTGAAGAAGGAAAGGAATGGCAAGAAGAATTTGAAACGGAAGCGTGGGAGGCCTCGCAAAATAGAGTTGAAAGAGGAAGATCAATTAGTTGATTGGTTGCCATGTAAGCGTGGAAGACCGCCCCTTGAGGGTAAACGTGGAAGACCGCCCCTTGAGGGTAAACGTGGAAGACCACCCCTTAAGGTTGGCAGACAAAACCATCTCCTAAAAGTGGCGCATAATAGAAAAGGAAAGGTGGACCGTCAAAAAGGTTTAACTATGAAAGATGGTGCAAATGGGAATGCAATTGAAGATACGAACTCAAGGAGAACTTCTGGGAATGAGTTAGAAAAGAAGGGATGTTCTCCTGTCAAGAAGAAAACTGAGAACAATGGGGTGGCCTCACCATTTGGATCAAATATATCGAAAGCACTTGCTGTAGATAAAAGTGGAAAGAGTAAAGTAAAGAGTGAAGTAAAGAGTAATGTAAGGAGTAAATTAAGGCAGTTAGTGAGGGATCAAATAATGGAACGGCTCTCTGCTGCAGGCTGGACAGTTGAGTATAGACCGAGGAATGGCAGAGTGTACAATGATGCAGTGTATGTTAGTCTTGATGGAAAGACACACTGGTCAATCACCTTGGCCTACAATAGGCTTAAAAGGCATTATGAAGCTGGTGATGGTGAAGGTAAGGTATACGGGCCAGGTTTCAAATTTACACCAATACCAGAAGAGGATTTCAAGATACTAACTAGGGTAATTGTCAAGCAAAGAAAAGATAAATGGACCCAAAAAGGGGGAAAGGGTGGAAAGACGATTGATGGAGTCAATAGCAAAGAGGGAAAAGGAAAACCAGGTTCTGGTGCAGGAATGGGTAAGTCAGTGAAAAGGAAAATAAAATGGAAACGTTCACTTCTTGATGAGGGCAACACAGATCTTACATCAGCTAGCAGGATGCCAGTTCTGCTCAGGGATCATAAGCGCCATAAAACACACAACAAGAAGCGGTGTGCTCTGTTGGTTCGCAATGCTGAGGAGGAGATAGATTCAGAAATTGATGGATATGTGTCATACAGTGGAAAACGAACTGTGCTTGCCTGGATGATTGATTTGGGTACTATCCTCCAAAATGGGAAGGTTCATTATAAGCAAGACGGAAGGGAATGTTTGTCTGGTAAGATCACAGGAGATGGCATTCATTGTGGCTGCTGTAATGAAATCGTAACAATTTCAGACTTTGAAGCTCATGCAGGAAGCAAACTCACTGATCCACTTAAAAATATACATATAGAGGAAGGAACTTCTCTCTTTCAATGCCTGCTAGATTCATGGAATAAACAAGATGAATTTGCACGGAAAGGTTTTCATTTCGTTGATGTTGCGGGTAAAGATCCAAATGATGATACATGTGGTATCTGTGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCAACATTTCATCAAAGCTGCCTGGATATAAAAAAGTTCCCTTCTGGTGACTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTTGGTTAGTGGAAGCTCAAACCAAACAGACGGCTATGATGATTTTACTATGTCTACATTACTTACATGCCATTTATGTGAGGAAAAATATCACAAATCCTGTATTGAGGCAAATGGCGACAAGACAAATGATTGCAGGGATGTCTTCTTTTGTGGAGACAGATGTCAAGAGTTATCTGAGAGACTTGAAATGCTTCTTGGGGTTAAGCATGAAATTGAAGATGGATTTTCTTGGACCTTTATTCGGCGATCAGATGTTGACCTTGATGCTTCTCAGATAAAACCTCATATGGTTGAATATAATTCCAAGCTGGCTGTTGCTGTATCAATAATGGATGAGTGCTTCATGCCATATATCGATCATAGAAGCGGGATTAATCTGATCCACAGTATTGTGTATAATTGTGGGTCAAACTTCAAACGTCTGAACTATAGTGGATTTGTTACTGCAATTCTAGAGAGAGGTGATGAGATTATATGTGCTGCATCTATCAGGATCCATGGGAACCAACTAGCAGAGATGCCTTTTATTGGTACCCGCTATATGTATAGACGACAAGGAATGTGCCGCCGGCTTCTAAATGCCATTGAATGGGCACTCAGCTCCTTAAATGTTGAGTTATTGGTCATACCAGCTATCTCAGAACTCAGAGAAACTTGGACTTCTGTTTTTGGGTTTCAGCCACTTGAATTAACAAGCAAGCAGATAATAAATAACATGAATCTGTTGGTATTCCCTCACGTAGATATGTTACAGAAGAAGATAAGTAAGCATAAATTTGCTGATGAAAATCTGATTCCTACAGAAGTTTCCAATTTTAAGACTCATACAATATACAAGGTAGCAAATAATCGTGATCAGGCGGACTCAACTGGATCTGAGTTGAACACTTCTACTGGGACCCCTCACTCTAATGCATGGCAGATAAATAAAACCATGTGTGTTAAATCTGGTTGTCGGCTTCCTGAGAGCTCATTGAATAAAGCACCTGACATTACTAGCAACACTGTGCACCATTGTAAATCTCCAAACGATGTCGCAGGGCAAGTTGTATGTCAGGCTGTTCATGAGAATTTGGCGGTGGAAAACAAAAGTACTGCAAATGCCCGTGATGATACTTGTTGCCAAGCTGAAGACATGAGTACATATAAGAATACTAGTGTCGTCATACCGAAATATGATGAGAAGCCAATAGATTTGGATAGCCAATCGAAAAATCGCCGTGTTCCTTATGAGGAAAGTCAATGTCTCACTGTGTCTCGTGTTAGCACTGAAGCTACTGAAGGACATTATGTTGGTACTTCGTTGGAGGTTACTGAAAACTTAACCGATGAGATGAAAGTAGCAAATGAGGTTGTTTCGGATAACAAGAATGATGAAAATTCTGCACACTGGGGGGCAGAAAGTATTCCTCTTGACTCACAAATTGTGTTTAGTACAAGGGAATCAAAAGATTCTGTTGACAGTATTAACCATGGTCCACATAAGATTTCGGACTGTTGTGAACTGAGAAGCAAGACTGATATTGTTCAACCGGACTTTCTAGGATCAAAAGAAGTACATGCTGATGAAGCGGAAATGTGCTCTGCCAGAACACCCAATCTTAAGACAAACATAAATCCTGGGAATGACCAATCCATAGTGGTATCTTCAGGTATTTGTGAGAAGATTGTAGATGGTGTCAATGAGAGGAGTAAAGCATCAAGTGTAGCTGAGGCCAATTTCCTTCCTGCTGATACAGACGTAGTTCCCAGTAAAAATCCTTGGATGGAGGAGTCTTCAGAGGTAGATGAGCCTGATTCGCAGGTTGATCAAACTGCACGGAGCAATGCTCCATCCTTGTGGAGCCCAAACACTGCTTCTGGTGCGGCTCTTCCCTGTGCATCTGGTGGCAATACTTCATGTGGCAACACTGAGGTGATAGTTCTGTCAAACCAAGCAAGTTGA | 3993 | 0.4212 | MREGLRSRTRSGKVSGGGGVVHNESGDVKNEAFDLGGEGLGAPDLTIEKKDAVEHAVKEECGLDLDVSTSGNVDLAENGKDRSTFSGVANVLEADVDMEEKKEQGSNDGVLIGGRVLRSRSKRGDSKKGFNVENGGVISGNNRGQDRFERVEVKTEYEEVDELVTEGCENERVGVKKERNGKKNLKRKRGRPRKIELKEEDQLVDWLPCKRGRPPLEGKRGRPPLEGKRGRPPLKVGRQNHLLKVAHNRKGKVDRQKGLTMKDGANGNAIEDTNSRRTSGNELEKKGCSPVKKKTENNGVASPFGSNISKALAVDKSGKSKVKSEVKSNVRSKLRQLVRDQIMERLSAAGWTVEYRPRNGRVYNDAVYVSLDGKTHWSITLAYNRLKRHYEAGDGEGKVYGPGFKFTPIPEEDFKILTRVIVKQRKDKWTQKGGKGGKTIDGVNSKEGKGKPGSGAGMGKSVKRKIKWKRSLLDEGNTDLTSASRMPVLLRDHKRHKTHNKKRCALLVRNAEEEIDSEIDGYVSYSGKRTVLAWMIDLGTILQNGKVHYKQDGRECLSGKITGDGIHCGCCNEIVTISDFEAHAGSKLTDPLKNIHIEEGTSLFQCLLDSWNKQDEFARKGFHFVDVAGKDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIKKFPSGDWHCIYCCCKFCGLVSGSSNQTDGYDDFTMSTLLTCHLCEEKYHKSCIEANGDKTNDCRDVFFCGDRCQELSERLEMLLGVKHEIEDGFSWTFIRRSDVDLDASQIKPHMVEYNSKLAVAVSIMDECFMPYIDHRSGINLIHSIVYNCGSNFKRLNYSGFVTAILERGDEIICAASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWALSSLNVELLVIPAISELRETWTSVFGFQPLELTSKQIINNMNLLVFPHVDMLQKKISKHKFADENLIPTEVSNFKTHTIYKVANNRDQADSTGSELNTSTGTPHSNAWQINKTMCVKSGCRLPESSLNKAPDITSNTVHHCKSPNDVAGQVVCQAVHENLAVENKSTANARDDTCCQAEDMSTYKNTSVVIPKYDEKPIDLDSQSKNRRVPYEESQCLTVSRVSTEATEGHYVGTSLEVTENLTDEMKVANEVVSDNKNDENSAHWGAESIPLDSQIVFSTRESKDSVDSINHGPHKISDCCELRSKTDIVQPDFLGSKEVHADEAEMCSARTPNLKTNINPGNDQSIVVSSGICEKIVDGVNERSKASSVAEANFLPADTDVVPSKNPWMEESSEVDEPDSQVDQTARSNAPSLWSPNTASGAALPCASGGNTSCGNTEVIVLSNQAS | 1330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi1907g00021 | 1330 | MobiDBLite | consensus disorder prediction | 208 | 233 | - | - | |
| Gabi1907g00021 | 1330 | CDD | PHD1_AIRE | 637 | 676 | - | - | |
| Gabi1907g00021 | 1330 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 777 | 937 | IPR000182 | GO:0016747 | |
| Gabi1907g00021 | 1330 | MobiDBLite | consensus disorder prediction | 1261 | 1318 | - | - | |
| Gabi1907g00021 | 1330 | ProSiteProfiles | Zinc finger PHD-type profile. | 634 | 679 | IPR019787 | - | |
| Gabi1907g00021 | 1330 | MobiDBLite | consensus disorder prediction | 99 | 143 | - | - | |
| Gabi1907g00021 | 1330 | PANTHER | PHD FINGER PROTEIN 12 | 319 | 1063 | IPR042163 | GO:0003714|GO:0045892 | |
| Gabi1907g00021 | 1330 | Pfam | Tify domain binding domain | 559 | 608 | IPR032308 | - | |
| Gabi1907g00021 | 1330 | MobiDBLite | consensus disorder prediction | 1285 | 1318 | - | - | |
| Gabi1907g00021 | 1330 | MobiDBLite | consensus disorder prediction | 249 | 305 | - | - | |
| Gabi1907g00021 | 1330 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 626 | 698 | IPR013083 | - | |
| Gabi1907g00021 | 1330 | MobiDBLite | consensus disorder prediction | 277 | 292 | - | - | |
| Gabi1907g00021 | 1330 | MobiDBLite | consensus disorder prediction | 208 | 235 | - | - | |
| Gabi1907g00021 | 1330 | SUPERFAMILY | FYVE/PHD zinc finger | 629 | 682 | IPR011011 | - | |
| Gabi1907g00021 | 1330 | MobiDBLite | consensus disorder prediction | 428 | 463 | - | - | |
| Gabi1907g00021 | 1330 | SMART | PHD_3 | 678 | 738 | IPR001965 | - | |
| Gabi1907g00021 | 1330 | SMART | PHD_3 | 636 | 677 | IPR001965 | - | |
| Gabi1907g00021 | 1330 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi1907g00021 | Gabi-Chr1907 | 249206 | 259937 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi1907g00021 | 149 | 944 | PHD Transcription Factor Family | AT5G36670 | 42.005 | 0.0 | 608 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi1907g00021 | - | - | lang:109346644 | 1483.39 |