Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1907g00012 ATGGGTCGTTCAAGGACAACCTTCAAACGTATTCCAAATGATGGAGCTCGAAAAGCAACTTCCATCCAGAGAAGGAAGGGACTAATGAAGAAAGTATCCAAATTTTCAACTATGTGTGGAGTTGAAGCTTGCTTAATTGTGTATGATGAGAATGGGGATGCTCAACCTATGACTTGGCCCCGAGACCCTATAAAGGCACACTCCATCATTGACAAGTATGAGCGTCAAAAAAATGAGAAACCCCTCAAGACCTTTGATCTTGAAGACTTTTTCAAGAATAAGAAGAACATGGTTGAAGCTGAGATTTCCAGAGTGAATAAAGATATCTTCAAGACAAAGTATCCAACTTGTCATCCAAGCTTCAACAACTTAGGAGAGGAGCAGCTGGAGGCTTTCATTGCTACGTTGGATGATAAGATTGGAGCTTGTGATCAGAGAATTAACATGCTAAAAAATGAGCATAAAAGTGAAGCCAACATCTGTTTCATTCAAAACATGGCTCAGAAGACTGGTGCTTCGTATCCTAGCCAACTCAATTACATGGAGATTATATCTGAAAGCCAACATATCCCTATCCCTGCTTCTCATATGAAGCAACTCAATAATGGGAACATCATTAATGCTATGTTTGGTTCTAATAATGGAGTTTGTAATCAGAGAATTGACATGCAAAATGAGCTTCATAGTGAAGCCAACGTCTGTTTCATTCAAAACATGGCTCAGAAGACTGGTGCTTCGTATCCTAGCCAACTCAATTACATGGAGATTATATCTGAAAGCCAACATATCCCTATCCCTGCTTCTCCTATGAAGCAACTCAATAATGGGAACATCATTAATCCCTATCCCTATCCCTAA 858 0.3963 MGRSRTTFKRIPNDGARKATSIQRRKGLMKKVSKFSTMCGVEACLIVYDENGDAQPMTWPRDPIKAHSIIDKYERQKNEKPLKTFDLEDFFKNKKNMVEAEISRVNKDIFKTKYPTCHPSFNNLGEEQLEAFIATLDDKIGACDQRINMLKNEHKSEANICFIQNMAQKTGASYPSQLNYMEIISESQHIPIPASHMKQLNNGNIINAMFGSNNGVCNQRIDMQNELHSEANVCFIQNMAQKTGASYPSQLNYMEIISESQHIPIPASPMKQLNNGNIINPYPYP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1907g00012 285 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Gabi1907g00012 285 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi1907g00012 285 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Gabi1907g00012 285 MobiDBLite consensus disorder prediction 1 22 - -
Gabi1907g00012 285 PANTHER MADS BOX PROTEIN 4 124 - -
Gabi1907g00012 285 CDD MADS_SRF_like 2 75 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi1907g00012 285 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi1907g00012 285 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi1907g00012 285 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi1907g00012 285 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi1907g00012 285 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1907g00012 Gabi-Chr1907 144015 144872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1907g00012 1 140 Type I MADS-box Gene Family AT5G55690 32.414 3.49e-17 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1907g00012 SRF-TF 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1907g00012 - - ccaj:109809010 223.402