Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1907g00007 ATGGCTCTCTCTATCTTGTGTCCTCTTCTTCTTGCCACCTCTCTTTTCATGCATAGTTTAGCAGATAATTCATGCACCGATTGTCTTGTTCAATCTCGGGCAGCATATTACCCAAATTCTGAACAAAATGGCACAGAAGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCTACCATTAATGGAGGGGATGTATCGGCTGCATCTAATCTTTATCGAAATGGTGTTGGCTGTGGTGCCTGTTACCAGGTGAGGTGTACCAAAAGTGCTTATTGCTCAGGCAACGGTGTCACTGTAGTTATAACTGACCAAGGCTCAGGAGGTAACACCGACTTCATTCTTAGCCAACGAGCCTTTGGTGGGATGGCTCAGAACACTGACGCAGCTGCTTCTCTATTAGCTCTTGGTGTTGTTGATATTGAATACAGACGTGTTTCATGCAGCTACCCCAACAAAAACATTACAGTTAAGATAGATGAGAGCAGCAACAACCCTCATTACTTGGCTTTTGTCATATGGTATCAACAAGGAAGGAGAGACATAACTGCTGTGCAGCTCTGTGAAGCACAGAACTTTGTATGCAAGTTACTTGATCGGAGTCATGGAGCAGTCTGGACCACTGTCTCTCCACCAAGTGGACCTTTGTCTTTAAGGATGTTGTTTAGTGCTGAAGAGGGAGAAGAAACATGGGTCGTTCCTGTTAATAACATACCAGAAGACTGGAAGGCTGGAGAAACATACGACTCCGGGGTACAAGTGGACCAATAG 765 0.4497 MALSILCPLLLATSLFMHSLADNSCTDCLVQSRAAYYPNSEQNGTEVGACGFGSFGATINGGDVSAASNLYRNGVGCGACYQVRCTKSAYCSGNGVTVVITDQGSGGNTDFILSQRAFGGMAQNTDAAASLLALGVVDIEYRRVSCSYPNKNITVKIDESSNNPHYLAFVIWYQQGRRDITAVQLCEAQNFVCKLLDRSHGAVWTTVSPPSGPLSLRMLFSAEEGEETWVVPVNNIPEDWKAGETYDSGVQVDQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1907g00007 254 PANTHER EXPANSIN-B3 15 251 - -
Gabi1907g00007 254 Pfam Lytic transglycolase 67 141 IPR009009 -
Gabi1907g00007 254 Gene3D - 148 252 IPR036749 -
Gabi1907g00007 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Gabi1907g00007 254 CDD DPBB_EXLB_N 30 146 - -
Gabi1907g00007 254 Gene3D - 17 147 IPR036908 -
Gabi1907g00007 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Gabi1907g00007 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Gabi1907g00007 254 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Gabi1907g00007 254 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Gabi1907g00007 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Gabi1907g00007 254 Pfam Expansin C-terminal domain 153 231 IPR007117 -
Gabi1907g00007 254 SUPERFAMILY Barwin-like endoglucanases 23 150 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1907g00007 Gabi-Chr1907 79932 81995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1907g00007 26 250 Expansin Gene Family AT4G17030 45.133 1.61e-59 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1907g00007 - - gmx:100794009 444.891