Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1904g00002 ATGGGTGTAACAATCTTCAGCTTATGTGCAAGGATTTTCTTCAATCTCCTCGGAGAGGTAGGACTCCAAACTTGCGTAGCCGCAGACCGTCCTAGCCCTCTTGGTCCTCAAGGGAAGAACCGGCGTGTGCAAAAGCCAACTGGATCTGTTTCTGACTTTAGAACAGCAATAGAGTTGAATCCTACTATACTAGGGGTAGATTGGTCACTACAATTTGAGAAGGATGATTGGAGGATTAAGGTTAGGGCCATTAGGACTTGGAAGGTCCCTAATTATGAGAAAAAGGGATTTGATGACAATCTGGAGATGATTCTGGCAGATGAACATGGTTCTACGATCCATGCTACTGTCAGAGGGACTTTGCAAGTTAGAAAAAAAATTATAGAAGGGGAAGCGTACTTTATTAGAAATTTTGGAGTTGGATTGAATGGTGAAGGTTTCAAGGCAACTAGGCATGTTTACAAAATTTCTTTCAACTTGAGGACAGATGTTAAGGCCATTGTTGATGCTACCATACCTGTCAATTATGTCATCGGTTTACTGACTGGAACTAGCGAAGTTGAAGAGCATGATGTGTTTGGTAGGAAAGCAAAAAAAATTATGCTGGAGCTTGACAACCGCAGGGAGCATTATGTTGATGAAGTGCAGAGTTTTTTGGCAAATAATCAGGCTTCTCAGAATGTTATAATAGTTCATCTTGCAAAGATGAAGGATTTCAGAGGTCAAAAGTCAATAACTAATACAAGATATACAACGCATCTCATTATGGATTCGAATGTAACAAAAATTAATGAATTCGAGAAAAAGCTTGGAAATGTTTCAGCGGATTGTATTCGTGGATTGTCCCAGTTGTCTACTCAATCGACATATTCCTTTGAGAATGATTTTCTTAAAAATACAGAAAGAAAGTGTATTACTGATATTAAAATTTCTACCGAGGTTATGACGTGTATTGCTTACGGAACTATCAAAGCAATTGAGAGTAAATACAACTGGTGGTACAAATCCTATAAGAAATGCCCGTATTATGTTTTTGAAGATTATGAGAAATGGTTTTGTAAAAATTGCCAAAAACATTGGAGTGATTATCAACCAAGATTCAGTGTTCAAGTCAGAGTTGTTGATAACACCGATTCTGCATCGTTCATTCTCTTTGATAGAGATTGTGTTACTTTGTTGGGTATGAGTGCTTCTGATTTGCGTGAATTGCAATACAAGAGCGGTGCTGATTTGGAACATTATCCAAAAGAATTTGATGTTCTTGTTGACAAGTCCATGCTGTTCAAGATTAATGTTAGAAAAAACAATTTTGACTCATACAGTGAGCCTAAATATCAAGTTTCTAAAGTTTGCACCGACGAAACTATTATGTCTTCCTTCATCAAGTCTGCAACAGAATTAAATGATGAAACTTTGTTTGATCAAGCTTTCGACAATGACATTGTTGCTGCTGAAAATGGAAGAGCTGCGGATGTTGCGAGTCAGACATGTGAAAGTGCAGATCCTGTTAATGATTCTCTGTCTATGATGACACCGTCTGTCAATTCTAATGAATTTATAGACGAAATTGCGAATGAAGACAACGTGGCAGATTAA 1596 0.3772 MGVTIFSLCARIFFNLLGEVGLQTCVAADRPSPLGPQGKNRRVQKPTGSVSDFRTAIELNPTILGVDWSLQFEKDDWRIKVRAIRTWKVPNYEKKGFDDNLEMILADEHGSTIHATVRGTLQVRKKIIEGEAYFIRNFGVGLNGEGFKATRHVYKISFNLRTDVKAIVDATIPVNYVIGLLTGTSEVEEHDVFGRKAKKIMLELDNRREHYVDEVQSFLANNQASQNVIIVHLAKMKDFRGQKSITNTRYTTHLIMDSNVTKINEFEKKLGNVSADCIRGLSQLSTQSTYSFENDFLKNTERKCITDIKISTEVMTCIAYGTIKAIESKYNWWYKSYKKCPYYVFEDYEKWFCKNCQKHWSDYQPRFSVQVRVVDNTDSASFILFDRDCVTLLGMSASDLRELQYKSGADLEHYPKEFDVLVDKSMLFKINVRKNNFDSYSEPKYQVSKVCTDETIMSSFIKSATELNDETLFDQAFDNDIVAAENGRAADVASQTCESADPVNDSLSMMTPSVNSNEFIDEIANEDNVAD 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1904g00002 531 Pfam Replication factor-A C terminal domain 320 450 IPR013955 -
Gabi1904g00002 531 CDD RPA1_DBD_A_like 78 164 - -
Gabi1904g00002 531 Gene3D - 288 462 IPR012340 -
Gabi1904g00002 531 SUPERFAMILY Nucleic acid-binding proteins 300 451 IPR012340 -
Gabi1904g00002 531 Gene3D - 69 170 IPR012340 -
Gabi1904g00002 531 PANTHER OS03G0429900 PROTEIN 69 470 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi1904g00002 531 SUPERFAMILY Nucleic acid-binding proteins 71 169 IPR012340 -
Gabi1904g00002 531 CDD RPA1_DBD_C 317 450 IPR047192 -
Gabi1904g00002 531 Pfam Domain of unknown function DUF223 102 166 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1904g00002 Gabi-Chr1904 19010 26906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1904g00002 323 450 Core DNA Replication Machinery Family AT5G08020 24.806 8.79e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1904g00002 - - vun:114180582 236.498