Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1901g00013 ATGAAGCCTATGGAAAATGATGACACTGTTGACGTTAATGATCAAAATAACTGGTTGGGTTTCTCACTCTCTCCTCAAATGAATATAGGTGTTTCTTCACACTCTCATCAGTCCCAACCTTCCACTGCTGCTGCTGAAGTAGTTCCAGCAAGCTTTTACCACCACCCTCCTCCTCTTAATAACTATGGCTACTATTATGGACTTGAAGCTGAAAATGTTGGATTGTATTCTACCCTGCCTATCATGCCTCTCAAATCTGATGGCTCTCTCTACGGAATGGAAGCTCTGAGCAAGTCACAAGTACAAGTAATGGCTACTACTTCAACACCAAAACTGGAGAATTTCTTAGGTAGCGAGGCTATGGGGACCCCTCACTATGAGTGTAGTGCCACAGAAACAATGCCTCTGAGCTTAGACAGTATGTTTTACAACCAACCCTCACGCCGTGACCCAAACAACGCAAATTACCAAAATCATGTCCAAGACATCAACCGACAACAGCAGCAACAACAACAACAACAGCAAGAGCTTCAAGACCAACACTTCTCATATTTCTCTACCTTGAGAAACCATGATGTGATGTTAGAAGGGTCCAAGCAAAGTCAAACTTCTGATAGCAATCTCCAGGTTCCGCACATGGCTGAGAATGGATTTCCTGGTCTTAAGAACTGGGTTGTAAGGAATTTCCCAGCTAGTCATGCACAAGAGTCTAAGATGACTGTTCCTGTGGAGGAAAATGGAGGTGAATCCGGGTCCATTGGATCAATGCCATATGGGGATTTGCAGTCTTTAAACTTGTCCATGAGTCCTAGCTCACAGTCAAGCTGTGTTACAAGTTCACAGCGTGCATCACCTGTTGTCATAGATTCTGTTGCCATGGATACAAAGAAAAGGGGTGCTGAAAAGGTTGAACAGAAACAAATTGTTCATAGGAAATCCATTGATACTTTTGGACAAAGAACCTCCCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTTTGGAAAATTATCAAAATGAACTCGAGCAAATGAAGAACATGACCCGACAGGAATATGTTGCTCATTTACGAAGAAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGGGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTACGATATTGCTGCCATAAAATTCAGAGGAGTTAATGCTGTAACCAACTTCGATATAACAAAATATGATGTGGAAAAAATTATGGCAAGCAGTAACCTACTTAGCATTGAGCTAGCTAGGCGGAACAAAGAGATAGATGGTGGAACTCTGTATATTGATCATAAGCCTTCTGGATATGATGACACCCAAGAAGCCATTCTAATGCAGAAGAACTGCGAAAGCCAATCAGATCAGTGGAAGATGGTTCTCCATGATCAATCCTCCCTTCAACTTAACCAGAATCCACCAAGAATTGAGACTGAAAAATGTCATCAGTCCTACTCAATGGCTTTGGATAACATGTTTCATCAAGAAGTAGAGGAATCAAGTAAGATGAGAACGCATGTGTCAAATCCTTCTTCATTGGCCACAAGTTTGAGCAGCTCAAGAGAATGTAGCCCAGATAGGACAAACTTGCAAATGCTCTCTGGAATGCCTTCAACTGCGTCCAAACTATTGACAAGAAGTCCAAATAGTAATGTGAATTCTTGGGACCCATCACCCCATTTGAGGCCTGCCATTTCCTTACCTCAGATGCCAGTTTTTGCTGCTTGGACAGATTTATAG 2001 0.4283 MKPMENDDTVDVNDQNNWLGFSLSPQMNIGVSSHSHQSQPSTAAAEVVPASFYHHPPPLNNYGYYYGLEAENVGLYSTLPIMPLKSDGSLYGMEALSKSQVQVMATTSTPKLENFLGSEAMGTPHYECSATETMPLSLDSMFYNQPSRRDPNNANYQNHVQDINRQQQQQQQQQQELQDQHFSYFSTLRNHDVMLEGSKQSQTSDSNLQVPHMAENGFPGLKNWVVRNFPASHAQESKMTVPVEENGGESGSIGSMPYGDLQSLNLSMSPSSQSSCVTSSQRASPVVIDSVAMDTKKRGAEKVEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEQMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITKYDVEKIMASSNLLSIELARRNKEIDGGTLYIDHKPSGYDDTQEAILMQKNCESQSDQWKMVLHDQSSLQLNQNPPRIETEKCHQSYSMALDNMFHQEVEESSKMRTHVSNPSSLATSLSSSRECSPDRTNLQMLSGMPSTASKLLTRSPNSNVNSWDPSPHLRPAISLPQMPVFAAWTDL 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1901g00013 666 FunFam AP2-like ethylene-responsive transcription factor ANT 322 391 - -
Gabi1901g00013 666 CDD AP2 322 389 IPR001471 GO:0003700|GO:0006355
Gabi1901g00013 666 Gene3D AP2/ERF domain 425 485 IPR036955 GO:0003700|GO:0006355
Gabi1901g00013 666 Gene3D AP2/ERF domain 322 391 IPR036955 GO:0003700|GO:0006355
Gabi1901g00013 666 SUPERFAMILY DNA-binding domain 322 391 IPR016177 GO:0003677
Gabi1901g00013 666 Pfam AP2 domain 426 475 IPR001471 GO:0003700|GO:0006355
Gabi1901g00013 666 Pfam AP2 domain 323 381 IPR001471 GO:0003700|GO:0006355
Gabi1901g00013 666 CDD AP2 424 485 IPR001471 GO:0003700|GO:0006355
Gabi1901g00013 666 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 172 563 - -
Gabi1901g00013 666 ProSiteProfiles AP2/ERF domain profile. 425 483 IPR001471 GO:0003700|GO:0006355
Gabi1901g00013 666 MobiDBLite consensus disorder prediction 591 612 - -
Gabi1901g00013 666 SMART rav1_2 323 395 IPR001471 GO:0003700|GO:0006355
Gabi1901g00013 666 SMART rav1_2 425 489 IPR001471 GO:0003700|GO:0006355
Gabi1901g00013 666 ProSiteProfiles AP2/ERF domain profile. 323 389 IPR001471 GO:0003700|GO:0006355
Gabi1901g00013 666 PRINTS Ethylene responsive element binding protein signature 465 485 IPR001471 GO:0003700|GO:0006355
Gabi1901g00013 666 PRINTS Ethylene responsive element binding protein signature 324 335 IPR001471 GO:0003700|GO:0006355
Gabi1901g00013 666 FunFam AP2-like ethylene-responsive transcription factor 424 485 - -
Gabi1901g00013 666 SUPERFAMILY DNA-binding domain 424 484 IPR016177 GO:0003677
Gabi1901g00013 666 MobiDBLite consensus disorder prediction 590 612 - -
Gabi1901g00013 666 Coils Coil 153 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1901g00013 Gabi-Chr1901 184370 187986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1901g00013 251 507 AP2-EREBP Transcription Factor Family AT4G37750 74.737 4.03e-142 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi1901g00013 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1901g00013 K09285 - gmx:100792451 1009.21