Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1901g00002 ATGCGAATGTTTCAGCCTCTTTCTAAGAGGGATGCGGTCGCTGGGTTCGAGGGCGGTGGTGATGGCCAGATTCTAGATCTGGACACGGCAGTGAAAGATGGGGTTTTGGGTGGTGTGGATGCTGGAGTTGTGGGAACTGGGGTTGGTGAAAAATTGGATCTTGGGAAGATGATTGAAGAGTTAGACTTGTCTGAAGTTCCCTCTGTGTTCATTTGCCCAATTTCCCTTGAGCCGATGCAAGACCCTGTGACCCTTTGCACGGGCCAAACCTATGAGAGGTCCAACATTCTGAAATGGTTCAGTTTGGGGTACTTCACTTGCCCCACCACGATGCAAGAGCTTTGGGACGATTCCATCACTCCAAATACCACCCTCTATCGTCTAATACACACTTGGTTTTCTCAGAAGTATTTGCTGATGAAGAAGAAATCGGAGGATGTACACGGAAGGGCCTCAGAACTTCTTGAGACACTGAAGAAGGTGAAGGGTCAAGCTCGTGTTCAGGCTCTCAAGGAGCTCCATCAAGTAGTGGTTGTTCATGCCACTGCCCGCAAGGCATTGATTGATGAAGGTGGAGTCTCTGTGATGTCATCGTTACTTGGTCCTTTTACATCCCATGCTGTTGGCTCAGAGGTTATTGGTGTTCTTGTGAGTTTAAACCTTGATTCTGAATCCAAAAAGAATCTTATGCAGCCTGCAAAAATTTCATTGATGGTGGACATTTTGAATGAGGGCTCAATTGAGACGAAAATCAATTGCACCCGGCTAATTGAATCATTGATTGACAAGAAGGATTTTCGGTCAGGGATTTTCAAAAGCCATAGCCTTTTGGTTGGGTTGATGAGGCTTGTGAAGGACAAGAGACACGCAAATGGACTCTATCCTGGACTAAGCCTCCTCAAAACATTATGCATGCATACAGAAGTTAAGAATCTGCTAGTGAGCATTGGGGTTATTTCTCAGTTGGTTGAGTTGTTTTCTGGTATGGGTCCTGATTGTTTGGAATTAGCCCTTTCCATTTTAGATGCATTGGCATCTATCCCAGAAGGCAGATTGGCTTTGAAGGATTGTTCTAATAGCATACCCATTATGGTGAAATTGTTGATGAGGGTCTCAGAGAATTGCACCCAATATGCATTGTCAATATTGTGGTCTGTGTGCAAGCTTGCACCTGAGGAGTGCTCTTTGATTGCTGTGGATGCGGGACTTGCTGCAAAACTCCTCCTTGTGATTCAAAGCGGTTGCAATCCTATATTAAAACAACAGTCTGCTGAGCTTTTGAAGTTGTGTAGTTTAAATTATTCAGATACAATCTTCATTTCCAAGTGCAAGCTTACTAGAACCATCCAATGA 1353 0.4449 MRMFQPLSKRDAVAGFEGGGDGQILDLDTAVKDGVLGGVDAGVVGTGVGEKLDLGKMIEELDLSEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGYFTCPTTMQELWDDSITPNTTLYRLIHTWFSQKYLLMKKKSEDVHGRASELLETLKKVKGQARVQALKELHQVVVVHATARKALIDEGGVSVMSSLLGPFTSHAVGSEVIGVLVSLNLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLIESLIDKKDFRSGIFKSHSLLVGLMRLVKDKRHANGLYPGLSLLKTLCMHTEVKNLLVSIGVISQLVELFSGMGPDCLELALSILDALASIPEGRLALKDCSNSIPIMVKLLMRVSENCTQYALSILWSVCKLAPEECSLIAVDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1901g00002 450 SUPERFAMILY RING/U-box 60 136 - -
Gabi1901g00002 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Gabi1901g00002 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Gabi1901g00002 450 PANTHER WDSAM1 PROTEIN 62 436 IPR045185 GO:0061630
Gabi1901g00002 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Gabi1901g00002 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Gabi1901g00002 450 CDD RING-Ubox_PUB 67 117 IPR045210 -
Gabi1901g00002 450 Gene3D - 139 445 IPR011989 -
Gabi1901g00002 450 SUPERFAMILY ARM repeat 154 435 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1901g00002 Gabi-Chr1901 29601 32424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1901g00002 1 450 U-box Gene Family AT3G49810 72.222 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1901g00002 - - gmx:100779827 760.37