Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi18g00001 ATGTCGAGGATATGTGTGAAGAATCTCCCAAAATATGTGGCGGAGGATCGACTACGAGAATTCTTTTCTCAGAAGGGAGAAATCACTGACGTCAAGCTTATGCGTACGAAAGACGGTAAGAGTCGCCAATTTGCTTTTATTGGATTTCGTACAAAGCATGAAGCTCAGGAAGCTATTGAATATTTCAATAGGTCTTACCTTGACACATCTAGAATAACTTGTGAGGTGGCTCGAAAACTTGGTGATGCAAATCTTCCTCAGCCATGGAGTCGATATTCAACTCACAAAGACAATAAAGTGACCACCTCAGATGTGAACAAACATGTTGAAGCTAAAGGACAAGGAGACAATTCTAAGGACATCGTTGATATTTGTGACCCACAGCTTCAAGATTTTCTTCAGGTCATGGAGCCTCGGACTAAGTCTAAACTGTGGGCAAATGATACATCAGTTGTATCCAATGTTGGCAATCACCAAGCAATATCAAATAAGGATAGCAAGGGTACATCGGCTGTGATCCATCCCATCTTACTTCAAAGTGACTCATTAGAAGATGGCTTTCCAAATACTTCTGAACCCAACAAGTCACGGGAGCTTGAACAAGATGAAGTCATTTCTGATATGGATTATTTCAAGAGTAGAGTGACAGAGAAGTGGTCTGATTCTGGAAGTAGTGATGATGAAGATGATAATGACAACAATGATTCAGTATGCATTGATGATCATGGAAAAGACAATCATAGTCATGTTAATGAAGATGAAGAAAATTGTGATAATAAATCTTCTGAAAGAACCCAAAGAAATGATGCTCAAGAATTAGACCTAGAGGGCCAAGAAGATACTTCTGGAGAGGATGTTGACCATGAAAAGGCTCAAGTGAATGCAACTGAGCAAGGGGGCCAAGTTTCAAATTCAGAATATGAGAAAGTAGCTTTTGAGTCCTGGCGACTGTTTGTCCGAAATCTTCCATATACGACCACTGAGGAGGAGCTGGAAGAGCATTTCAGTCAGTTTGGTAGTGTGTCACAGGTTCATCTAGTTGTTGATAAAGATACTAAACGATCCAAAGGAATAGCATATGTTCTTTTTTCACTTCCAGAATGTGCAGCTAGGGCGCTAAAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCATTCAAAGACCTTCAAACTATGACGAGAATAATGTTTCAAAGGACCAAAGCTCTAAAACTCTCAAACAACGGAGAGAGGAAGAGAGGAAATTGGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTTTGTTCATGCGCCCTGATACTGTTGTGGAAAACATTGCCCGCAAATATGGTGTCAGTAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCTGTACGTATTGCTTTGGGAGAAACTCAAGTGATTTTAGAGACAAAAAAGGCATTTACAAATGCCGGAGTGAATGTGGAGTCTTTGGAGGAACTTGCCAATGGAAAAGTTGATGGCTTAAAAAGAAGTAACCATGTGCTTTTAGTGAAGAACTTGCCCTACGGTTCTACAGAAAATGAACTTGCAAAGAAGTTTGGTAAATTTGGTAATTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCCCTGGTTGTTTTCCTTGAACCAGCAGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGAAATTCAAGGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATGTTCTTAGCCAAAGCGCAACATCTAAAAATAATGAAATGAATAGTGCAATTGGTGAAAATGATGCCAAGCGGCTGATATTGGAGCAACACGTGGAAAGAATATCAGATGTGGACATTGATCCGAACAGGGTAGAGGCTCGGTCCCTGTTTGTCAAGAACCTCAATTTCAAGACAACAGACAAGAGTCTGAGGAAGCATTTTACTGAGCACATGAAAGAGGGAAGAATTTTGAGTGTCAAGGTGAATAAGCACTTGAAAAATGGGAAAAATGTTTCTATGGGTTTTGGATTCGTTGAGTTTGACTCCACGGAGACAGCTACAAATGTTTGTAGCGATTTACAGGGGACTGTTTTGGAGGGGCATGCTATTATTTTACAACTTTGTCATGTCAAGAATGACGGGCAAGTACGAAAGACAGTTGAGAAGGATAAGAGTTCTACAAAATTGCTTGTAAGAAATGTTGCTTTTGAGGCAACAAAGAAGGACCTAAGACAGTTGTTTAGCCCGTTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAATCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTTGAAGCACTCTCAAGCACCCATCTGTATGGTAGGCATCTGGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAAGAACTAAGGGCTCGAACAGCTGCTCAATTTAGTGAACAAAATGAATTTCAAAATTCTTCTGAGTTATCCAAGAAAAGGAAGCACATGGGCATTTTCGATGAAGAAAAGGGAAAGTTTCAAAGGATTGCTGATTAG 2568 0.403 MSRICVKNLPKYVAEDRLREFFSQKGEITDVKLMRTKDGKSRQFAFIGFRTKHEAQEAIEYFNRSYLDTSRITCEVARKLGDANLPQPWSRYSTHKDNKVTTSDVNKHVEAKGQGDNSKDIVDICDPQLQDFLQVMEPRTKSKLWANDTSVVSNVGNHQAISNKDSKGTSAVIHPILLQSDSLEDGFPNTSEPNKSRELEQDEVISDMDYFKSRVTEKWSDSGSSDDEDDNDNNDSVCIDDHGKDNHSHVNEDEENCDNKSSERTQRNDAQELDLEGQEDTSGEDVDHEKAQVNATEQGGQVSNSEYEKVAFESWRLFVRNLPYTTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGIAYVLFSLPECAARALKELDNSIFQGRLLHVMPAIQRPSNYDENNVSKDQSSKTLKQRREEERKLAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVILETKKAFTNAGVNVESLEELANGKVDGLKRSNHVLLVKNLPYGSTENELAKKFGKFGNLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKKFKDAPLYLEWAPSNVLSQSATSKNNEMNSAIGENDAKRLILEQHVERISDVDIDPNRVEARSLFVKNLNFKTTDKSLRKHFTEHMKEGRILSVKVNKHLKNGKNVSMGFGFVEFDSTETATNVCSDLQGTVLEGHAIILQLCHVKNDGQVRKTVEKDKSSTKLLVRNVAFEATKKDLRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALEALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSEQNEFQNSSELSKKRKHMGIFDEEKGKFQRIAD 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi18g00001 855 SUPERFAMILY RNA-binding domain, RBD 725 808 IPR035979 GO:0003676
Gabi18g00001 855 SMART rrm2_1 316 389 IPR003954 GO:0003676
Gabi18g00001 855 SMART rrm2_1 3 75 IPR003954 GO:0003676
Gabi18g00001 855 Gene3D - 2 95 IPR012677 -
Gabi18g00001 855 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 316 415 - -
Gabi18g00001 855 Gene3D - 626 724 IPR012677 -
Gabi18g00001 855 FunFam Nucleotide/nucleic acid binding protein 626 721 - -
Gabi18g00001 855 MobiDBLite consensus disorder prediction 182 305 - -
Gabi18g00001 855 CDD RRM6_RBM19_RRM5_MRD1 730 804 - -
Gabi18g00001 855 MobiDBLite consensus disorder prediction 236 274 - -
Gabi18g00001 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Gabi18g00001 855 SUPERFAMILY RNA-binding domain, RBD 507 595 IPR035979 GO:0003676
Gabi18g00001 855 SUPERFAMILY RNA-binding domain, RBD 614 717 IPR035979 GO:0003676
Gabi18g00001 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 632 706 IPR000504 GO:0003723
Gabi18g00001 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 732 799 IPR000504 GO:0003723
Gabi18g00001 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Gabi18g00001 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 387 IPR000504 GO:0003723
Gabi18g00001 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 512 575 IPR000504 GO:0003723
Gabi18g00001 855 Gene3D - 191 403 IPR012677 -
Gabi18g00001 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 730 806 IPR000504 GO:0003723
Gabi18g00001 855 SMART rrm1_1 3 75 IPR000504 GO:0003723
Gabi18g00001 855 SMART rrm1_1 731 802 IPR000504 GO:0003723
Gabi18g00001 855 SMART rrm1_1 511 578 IPR000504 GO:0003723
Gabi18g00001 855 SMART rrm1_1 631 709 IPR000504 GO:0003723
Gabi18g00001 855 SMART rrm1_1 316 389 IPR000504 GO:0003723
Gabi18g00001 855 MobiDBLite consensus disorder prediction 396 425 - -
Gabi18g00001 855 MobiDBLite consensus disorder prediction 195 222 - -
Gabi18g00001 855 Gene3D - 504 606 IPR012677 -
Gabi18g00001 855 Gene3D - 725 833 IPR012677 -
Gabi18g00001 855 SUPERFAMILY RNA-binding domain, RBD 308 400 IPR035979 GO:0003676
Gabi18g00001 855 FunFam RNA-binding motif protein 19 1 100 - -
Gabi18g00001 855 CDD RRM1_MRD1 2 77 - -
Gabi18g00001 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 630 713 IPR000504 GO:0003723
Gabi18g00001 855 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Gabi18g00001 855 MobiDBLite consensus disorder prediction 409 425 - -
Gabi18g00001 855 FunFam Multiple RNA-binding domain-containing protein 1 724 830 - -
Gabi18g00001 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 393 IPR000504 GO:0003723
Gabi18g00001 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 510 582 IPR000504 GO:0003723
Gabi18g00001 855 CDD RRM5_RBM19_like 631 711 IPR034423 -
Gabi18g00001 855 CDD RRM4_RBM19_RRM3_MRD1 510 581 - -
Gabi18g00001 855 FunFam Multiple RNA-binding domain-containing protein 1 501 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi18g00001 Gabi-Chr18 19037 43538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi18g00001 623 823 Eukaryotic Initiation Factors Gene Family AT1G49760 28.505 2.22e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi18g00001 K14787 - gmx:100798742 1275.38