Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1899g00023 ATGGAAATTGATCTGAACCATGAAGTGACTGAGGTTGAGAAGAATGCAATCTGTGATAGGGAATGTGAGAAAGGTGCTTGTTGTTTGTCCTCTTCAACTTGTTCATCTTCTAGTTCCTTTTCAGCTCGTGTATCTTCTTCTTATCTCGAGCTTTGGCATGCTTGTGCTGGCCCCCTCACATCACTCCCTAAGAAAGGAAATGTGGTTGTCTATTTTCCACAAGGTCACTTAGAACAAGTTGCTTCTTTCTCTCCTTTCACACCAATGGAGATGCCAACCTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTTCAGCTACTTGCCAACAAGGACAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTTGGCAGAGATGCATTCTGAGGAAAAAGAACTTGAGGAATTGGGAGCAGATGAAGAGGGAAATGGAGGATTACCTACAAAATCAACCCCTCACATGTTCTGCAAAACACTAACTGCTTCTGATACCAGCACTCATGGGGGGTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTATTGCCCAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCATATTTATAGAGGTCAGCCTAGGCGGCATCTACTCACTACTGGCTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCTGGTGATGCTGTGCTCTTTCTAAGGGGTGAAAATGGAGAACTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGGTCTTCCTGAATCAATTGTTGGTCCCCAGAACTGTTATCCCAGTTTCCTTTCTTCTGTGGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCAGATTTTGTTGTTCCCTACCAAAAATATGTCAAAAGCATCAAGAATCCAGTGACCATTGGGACAAGATTCAAAATGAGATTTGAAATGGATGAATCTCCAGAAAGAAGGTGTAGTGGTGGTATGGTGACTGGAATGAGTGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATACTGAGACTAATCATCAAGATCGAGTATCTCCATGGGAGATAGATCCTTCTGCTTCTCTTCCTTCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTGCAGGTTGCCTCACCTAGTCACCTCATCACTGGTATGAGAGGCAGTGGATTGGTGGACTTTGAGGAGTCTGTAAGATCACACAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGTGTCACTCTACTATGGATGCGACACAGTAACCAACCGGCCAGGTTTTGAGATGAGCTCTCAAAGTCATCCAAATCTTGCATCAACTGGAGTAAGAAAGGTTAACTCTGCTGAGCATATGAGTGTTCACCCTTTCAGTTATGCAGGCTTTATGGAAACTAATACGTTCCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCCCTGACAGGAAAGGTTGATTTGAACCTTGCTGTTTGGGGAAAACCCAATGTAAGTTGCACAACTTTCAACCTCCATCAGGAAACCAAACCCAACTTTCAATCTGCATATTTTCCTTATGGGGATATTCACAAAGCCGGTCAAGCTAGCATGTTTTGCTCCAAACCCACCAGTTTCCAGAGAGAGAATGTCCCATTTAACACGCCATCCACTCAGACAAGGATCATTAGAAATGAAGTTGGTGGATCAAATCTCCCAAATGAGCATAAGCAGCAGGACAGTGTTTCTGCTTCTGCTTCATTAGGGGCTGCAAATATGAGGATTTCAGATGACAACAATGTCAAGGGAAAGGTAAATGCATGCAAACTATTCGGGTTTCCTTTGTTTGGGGAAACTACCATCCAAAATATACAGAACCCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGTGGCTACAATGACCTTCTGAATGAACTAGAGAGACTATTTGGCATGGAAGGCCTTCTAAGTGATTCTAAGCAGGGATGGAGGATCTTGTACACGGACAGCGAGAATGACATAATGGTTGTGGGGGATGATCCATGGCATGAGTTTTGCAACGTGGTGTCCAAGATCCATATATATACCCAAGAAGAAGTGGAGAAGATGACAATTGGGATGATCAGTGATGATACTTATAGCTGTTTGGAACAGACACCAGTGGTTATGGAGGCTTCAAAGTCTTCCTCAGTGGGCCAGCCAGATTGTTCTCCAACTGTAGTTAGAGTCTAA 2382 0.4362 MEIDLNHEVTEVEKNAICDRECEKGACCLSSSTCSSSSSFSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPMEMPTYDLQPQIFCRVVNVQLLANKDNDEVYTQVTLLPQAELAEMHSEEKELEELGADEEGNGGLPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELIAQDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGPQNCYPSFLSSVANAISTKSMFHVFYSPRASHADFVVPYQKYVKSIKNPVTIGTRFKMRFEMDESPERRCSGGMVTGMSDLDPYRWPKSKWRCLMVRWDEDTETNHQDRVSPWEIDPSASLPSLSIQSSPRLKKLRTGLQVASPSHLITGMRGSGLVDFEESVRSHKVLQGQENAGFVSLYYGCDTVTNRPGFEMSSQSHPNLASTGVRKVNSAEHMSVHPFSYAGFMETNTFPRVLQGQEICPLKSLTGKVDLNLAVWGKPNVSCTTFNLHQETKPNFQSAYFPYGDIHKAGQASMFCSKPTSFQRENVPFNTPSTQTRIIRNEVGGSNLPNEHKQQDSVSASASLGAANMRISDDNNVKGKVNACKLFGFPLFGETTIQNIQNPAKRSCTKVHKQGSLVGRAIDLSRLSGYNDLLNELERLFGMEGLLSDSKQGWRILYTDSENDIMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGMISDDTYSCLEQTPVVMEASKSSSVGQPDCSPTVVRV 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1899g00023 793 Gene3D - 326 399 - -
Gabi1899g00023 793 Pfam Auxin response factor 288 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi1899g00023 793 SUPERFAMILY DNA-binding pseudobarrel domain 154 272 IPR015300 -
Gabi1899g00023 793 ProSiteProfiles PB1 domain profile. 665 749 IPR000270 GO:0005515
Gabi1899g00023 793 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
Gabi1899g00023 793 FunFam Auxin response factor 660 754 - -
Gabi1899g00023 793 Gene3D - 661 754 - -
Gabi1899g00023 793 FunFam Auxin response factor 160 264 - -
Gabi1899g00023 793 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Gabi1899g00023 793 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 47 754 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi1899g00023 793 SMART B3_2 162 264 IPR003340 GO:0003677
Gabi1899g00023 793 CDD B3_DNA 160 262 IPR003340 GO:0003677
Gabi1899g00023 793 Pfam AUX/IAA family 662 749 IPR033389 -
Gabi1899g00023 793 FunFam Auxin response factor 325 398 - -
Gabi1899g00023 793 SUPERFAMILY CAD & PB1 domains 668 744 - -
Gabi1899g00023 793 Gene3D - 160 264 IPR015300 -
Gabi1899g00023 793 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1899g00023 Gabi-Chr1899 198789 204995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1899g00023 44 793 B3 DNA Binding Superfamily AT5G60450 61.761 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi1899g00023 AUX_IAA 2.8e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1899g00023 - - gmx:100783513 1330.08