Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1899g00018 ATGGATTTGGATTTGGTATCAAGTGTCAAGGAAAAATTGACATATTTTCGTATAAAAGAGCTCAAAGATGTGCTCTCTCAGTTAGGACTTTCCAAGCAGGGAAAGAAGCAGGATCTTTTGGAGCGCATATTATCCATTCTCTCTGATGATCAAGTTTCCAAAATGTGGGCTAAGAAGAATGCTCTTGGGAAAGAACAGGTGGCCAAATTAGTGGACGATACATACAGAAAAATGCAGCCGATATCTGGGGCCACTGATCTAGCATCGAAGGGACAGGGTGCGTCAGATAGTAGTAACGTGAAAGTTAAAGCTGAAATTGACGATTCCTTTCAATCGGATGCTAAGATTCGCTGTCTCTGTGGAAAAACATTGGAAACAGAGGATTTGGTCAAGTGCGATGATGAAAAATGCCATGTGTGGCAACACATCAGTTGCGTTATTATTCCAGAGAAACCTATGGAAGGCATCCCACCAGTACCTGATAAGTTTTATTGTGAAATCTGTCGACTCAGTCGTGCAGACCCGTTTTGGGTTTCAAAGGCGCATCCTCTGTTTCCAGTAAAGCTGACCATAACCAGTAATCCGACTGATGGATCCAACCCAGTGCAGAGTGTGGAGAAAACATTTCAACTTACAAGAACAGAGAAGGACCTTGTGTCAAAACCGGAATTCGATGTTGAGGCTTGGTGTATGCTTCTAAACGACAAGGTTCCATTCAGGATGCATTGGCCACAATTCACAGACCTACAGGTCAATGGTGTTCCGGTTCGTGCAATTAACAGACCTGGTTCACAATTGCTTGGGACTAATGGTCGTGATGATGGTCCAATTATCACGCCATATACAAAGGACGGAATTAATAAGATTTCCTTAACAGTATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTGAAAGGCGCAGCATGCAACAGATCCTAAACATGATTCCAAAGGAATCTGATGGTGAGTGTTTTGAAGATGCTCTTGCACGTGTCTCTCGTTGTGTTGGTGGTGGAAATGCAGCTGATAAAGCTGATAGTGATAGTGATTTGGAAGTGGTTTCAGATACTTTCAGCATTAATCTTCGCTGTCCAATGAGCGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGCATTCACATGGGTTGCTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGGTCAAGGAAGTGGCAATGTCCCATATGTCTCAAAAACTATGCATTGGAGAATATCATCATTGACCCTTATTTCAACCGCATCACTTCTAAGATGATAAATTGTGGTGAAGAAGTTACAGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTCAAGGCAAAGAGTGAAAGTGAACGTCTGGATTTAGGGAATCTTGCACAATGGCACTTTCCTGATGGATCCCTGTGTTTTTCTACCGATGGAGATGTCAAAAGAGTAGAAACATTGAAGCAGGTCAAACAGGAAGGTGTTTCGGACAGTCCTAATGGTTTAATACTTGGCATCAAGAAGAATCGCAATGGAGTTTGGGAAGTCAGCAAACCTGAGGGAACACACACCTCTTCTGGTAATAAATTAAAAGAAGTTTTTGGAAATCATAAACAGGTGGTTATTCCGATGAGCAGCAGTGCCACTGGAAGTGGCCGGGATGGTGATGATCCTAGCGTAAATCAAGGTGGGGGTGGGCATATTGATTATTCTACTACCAATGGGATTGAGATGGATTCTCTGTGTCTCAATAATGTTGATTTAGCATATGGATACACTGCCCATAGCACTTCTGCTCAGGTGGGTGATGCAGAAGTTATTATTCTTAGTGATTCTGATGAAGACAATGACATATTGGTATCTCCTCCAATTGCATATAAGAACAACCAAAATGATGCTGCTGGAAATGATTACTCTGTGCCTCCGCCTGGAATCGTTGATTCATATACTGAAGATCAGATTGGTGGAAATTCATGCTTGGGGCTTTTTCCTAGTGAAGATGATTTTGGGATACATTCCCTGTGGTCTTTGCCTTCTTCTACTCAGGCTGGTCCCAGTTTCCAATTATTTGGTTCGGATGCAGATGTGTCAGATGCATTGGTCCATCTGCAGCATGGTCCTATTAATTGCTCCTCCTCATTGAATGGTTATCCGTTGGCTCCCGATACTGCTTTGGGACCTAGTAGTCTCTTACCTAATTCCTCTGCTGGTCGGTCTGATGCTGACTTAAATGGTGGTTTGGTTGACAATCCATTGGCATTTGCTGGAGATGATCCCTCGCTTAAGATTTTTCTACCCACAAGACCTGCAGAATCATCTATGCAGAATGAATTGAGAGATCAGGCAGATGTGTCTAACGGTGACTGCTCTGGAGATTGGATATCCCTTAGCCTCGGAGGTGGCGCTGGCGCTGGTGGCAGTAATGGCAATGCTTCCACTCAAAATGGGTTGAATTCTAGACATCAACTCCCAACTAAAGAAAGTGCCACAAATACTTTGACCGATACTGCTTCTTTGCTTCTTGGTATGAATGATGTTAGATCTGACAAAGCAAGTAGGAAAAGATCAGATAGTCCTTTCTCATTTCCTCGCCAAAAACGTTCTGTAAGGCCGCGGTTGTACCTTTCTATTGATTCAGATTCGGAGTAA 2652 0.4287 MDLDLVSSVKEKLTYFRIKELKDVLSQLGLSKQGKKQDLLERILSILSDDQVSKMWAKKNALGKEQVAKLVDDTYRKMQPISGATDLASKGQGASDSSNVKVKAEIDDSFQSDAKIRCLCGKTLETEDLVKCDDEKCHVWQHISCVIIPEKPMEGIPPVPDKFYCEICRLSRADPFWVSKAHPLFPVKLTITSNPTDGSNPVQSVEKTFQLTRTEKDLVSKPEFDVEAWCMLLNDKVPFRMHWPQFTDLQVNGVPVRAINRPGSQLLGTNGRDDGPIITPYTKDGINKISLTVCDARIFCLGVRIVERRSMQQILNMIPKESDGECFEDALARVSRCVGGGNAADKADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSKMINCGEEVTEVEVKPDGSWRVKAKSESERLDLGNLAQWHFPDGSLCFSTDGDVKRVETLKQVKQEGVSDSPNGLILGIKKNRNGVWEVSKPEGTHTSSGNKLKEVFGNHKQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTTNGIEMDSLCLNNVDLAYGYTAHSTSAQVGDAEVIILSDSDEDNDILVSPPIAYKNNQNDAAGNDYSVPPPGIVDSYTEDQIGGNSCLGLFPSEDDFGIHSLWSLPSSTQAGPSFQLFGSDADVSDALVHLQHGPINCSSSLNGYPLAPDTALGPSSLLPNSSAGRSDADLNGGLVDNPLAFAGDDPSLKIFLPTRPAESSMQNELRDQADVSNGDCSGDWISLSLGGGAGAGGSNGNASTQNGLNSRHQLPTKESATNTLTDTASLLLGMNDVRSDKASRKRSDSPFSFPRQKRSVRPRLYLSIDSDSE 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1899g00018 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 174 IPR013083 -
Gabi1899g00018 883 SMART PHD_3 117 169 IPR001965 -
Gabi1899g00018 883 Pfam MIZ/SP-RING zinc finger 362 410 IPR004181 GO:0008270
Gabi1899g00018 883 ProSitePatterns Zinc finger PHD-type signature. 118 168 IPR019786 -
Gabi1899g00018 883 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Gabi1899g00018 883 MobiDBLite consensus disorder prediction 807 842 - -
Gabi1899g00018 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 450 IPR013083 -
Gabi1899g00018 883 SMART sap_9 13 47 IPR003034 -
Gabi1899g00018 883 FunFam E3 SUMO-protein ligase SIZ2 336 450 - -
Gabi1899g00018 883 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 11 664 - -
Gabi1899g00018 883 FunFam E3 SUMO-protein ligase SIZ1 2 68 - -
Gabi1899g00018 883 MobiDBLite consensus disorder prediction 806 883 - -
Gabi1899g00018 883 MobiDBLite consensus disorder prediction 848 862 - -
Gabi1899g00018 883 CDD PHD_Bye1p_SIZ1_like 117 168 - -
Gabi1899g00018 883 ProSiteProfiles Zinc finger SP-RING-type profile. 349 432 IPR004181 GO:0008270
Gabi1899g00018 883 SUPERFAMILY SAP domain 4 66 IPR036361 -
Gabi1899g00018 883 MobiDBLite consensus disorder prediction 545 568 - -
Gabi1899g00018 883 Pfam PHD-finger 117 169 IPR019787 -
Gabi1899g00018 883 Gene3D SAP domain 6 66 IPR036361 -
Gabi1899g00018 883 SUPERFAMILY FYVE/PHD zinc finger 110 172 IPR011011 -
Gabi1899g00018 883 CDD SP-RING_Siz-like 363 412 IPR031141 -
Gabi1899g00018 883 Pfam SAP domain 16 44 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1899g00018 Gabi-Chr1899 168597 181672 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi1899g00018 PHD 5.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1899g00018 - - gmx:100793735 1504.58