Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1899g00004 ATGGACTTAACCGAAGACTTGCAGTGCTCGTTAACGGAGCAACGCCGAGAGCTCGCGGCGGCGGAATCCATGGAATCCGACCTCGACTTCGCCTTCCGTCTCCAGATGGAGGAAGCCCTCGCCGCCTCCCAGGAAGGCCACCCCTCTTCTTCCTCCGCCGCCGCTGCCGTCGTCGAAGAAGAGCCCGTCGTTTTGAAAGCCACCACTCTCCAATTCGAGGAGCTGACGAGGTTGGAGCGCGAAATCAAGGACCGCGAGCAGAGCGAGATCGAGATGCGCAAGATTAGGGAGGATCTCAGCCGTCGGATTCACGACCAGAAGGTGGCGAACGAGATTCTCAGGATCCCCGAGGCCGATTGGGAGCAATGGGGCGATAATTTCGAGAAGCCGTTCGGCGAGGGTTGTTCATCCGGTTCGAAGAAGGGTGTGATCGACGAGGGTTCGGTTTTTAGGGTTTACTTCAAGGGTTTAGTGAGCGATGAGAGTTTGAAGGGTGAGAAGCTCGTGTTGGCTGGGATTGGTGTTGCAATTTGTGACCCTAGTGATAATTTGATACTCGAGATTTCGAAGCCACTGGTTGGTAATGGAACCAACAAGGTTGCTGCAGAGGCTAAGGCTTTGATTGAAGCCTTTAATGCTGCAATTTTTTTGGACTTGAAACGTGTTACATATTGTTGTGATTCTTATCCCCTGTTTCAATTTCTAAATGGGAAATGGCCTGCGAAACGGAGGAAGATTGCTATACTTGTTAATCAGGTGAATTTGCTTCAAAGAAATTTTACTCATTGCAGTCCAAGGCTTTTGGCTAGAAATGATGTTAAGTTTGCATTTAAGCTTGCAAAAGATGCAATTGTTTCTCAGTCCACAAAGCCTGTGGAATCTGGCTGTAGTAGAAAGAATCTGAATGAAACTTGTGTCATATGTTTGGAGGATACTGATATGAATCAAATGTTCTCAGTTGATGGCTGTAAACACCGTTATTGCTTTTCTTGCATGAAACAACATGTCGAGGTGAAGTTGCTTCAAGGAATGGTGCCAAAATGCCCTCATGAAGGATGCAATCATGAGCTTCTAGTTGACAGCTGCAGGAAATTCTTGACTCATAGATTTGTTGAGACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCTGCTACTGAGAAAATTTATTGTCCTTATCCGAGATGCTCTGCTTTAATGTCGAAAACTGAGGTTTTAGAGTACTCCAATAATCTTATTGGTCACTCTGAACAATCAGGACCCAAGAAATGCATAAAATGTCATGGTCTTTTCTGTTTCAGCTGCAAGGTCCCTTGGCATAGTGGTATGACATGTTCTACTTACAAAAGGTTGAATCCTAATCCTCCTGCGGAAGATGTGAAGCTGAAGTTTCTGGCAACAACAAGTCTATGGCGGCAGTGCTTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGTTATCACATGACTTGCAGATGTGGGTACGAATTTTGCTATAACTGCGGAGCTGAGTGGAAGAACAAAAAAGCAACATGTTCTTGCCCACTTTGGGCCGAGGACAATATTTGGTTACAGGATCGTGAGAGGGAGTGGGAAGAAGATGATGATGATGACGACGACTATTATGACTCTGATTCTGATGAATTTTATTAA 1656 0.4553 MDLTEDLQCSLTEQRRELAAAESMESDLDFAFRLQMEEALAASQEGHPSSSSAAAAVVEEEPVVLKATTLQFEELTRLEREIKDREQSEIEMRKIREDLSRRIHDQKVANEILRIPEADWEQWGDNFEKPFGEGCSSGSKKGVIDEGSVFRVYFKGLVSDESLKGEKLVLAGIGVAICDPSDNLILEISKPLVGNGTNKVAAEAKALIEAFNAAIFLDLKRVTYCCDSYPLFQFLNGKWPAKRRKIAILVNQVNLLQRNFTHCSPRLLARNDVKFAFKLAKDAIVSQSTKPVESGCSRKNLNETCVICLEDTDMNQMFSVDGCKHRYCFSCMKQHVEVKLLQGMVPKCPHEGCNHELLVDSCRKFLTHRFVETMQQRKLEASIPATEKIYCPYPRCSALMSKTEVLEYSNNLIGHSEQSGPKKCIKCHGLFCFSCKVPWHSGMTCSTYKRLNPNPPAEDVKLKFLATTSLWRQCLKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKNKKATCSCPLWAEDNIWLQDREREWEEDDDDDDDYYDSDSDEFY 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1899g00004 551 SMART ibrneu5 446 515 IPR002867 GO:0008270
Gabi1899g00004 551 SMART ibrneu5 372 445 IPR002867 GO:0008270
Gabi1899g00004 551 SUPERFAMILY RING/U-box 303 385 - -
Gabi1899g00004 551 ProSitePatterns Zinc finger RING-type signature. 323 332 IPR017907 -
Gabi1899g00004 551 FunFam RBR-type E3 ubiquitin transferase 443 551 - -
Gabi1899g00004 551 ProSiteProfiles Zinc finger RING-type profile. 305 349 IPR001841 -
Gabi1899g00004 551 MobiDBLite consensus disorder prediction 529 551 - -
Gabi1899g00004 551 CDD BRcat_RBR_unk 385 448 - -
Gabi1899g00004 551 Gene3D - 151 290 IPR036397 GO:0003676
Gabi1899g00004 551 ProSiteProfiles TRIAD supradomain profile. 301 525 IPR044066 -
Gabi1899g00004 551 Gene3D - 442 546 - -
Gabi1899g00004 551 FunFam RBR-type E3 ubiquitin transferase 300 385 - -
Gabi1899g00004 551 Pfam IBR domain, a half RING-finger domain 373 445 IPR002867 GO:0008270
Gabi1899g00004 551 Pfam IBR domain, a half RING-finger domain 464 513 IPR002867 GO:0008270
Gabi1899g00004 551 FunFam RBR-type E3 ubiquitin transferase 150 287 - -
Gabi1899g00004 551 Pfam Reverse transcriptase-like 169 283 IPR002156 GO:0003676|GO:0004523
Gabi1899g00004 551 SUPERFAMILY RING/U-box 387 450 - -
Gabi1899g00004 551 SUPERFAMILY RING/U-box 459 522 - -
Gabi1899g00004 551 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 213 531 IPR031127 GO:0004842|GO:0016567
Gabi1899g00004 551 MobiDBLite consensus disorder prediction 530 551 - -
Gabi1899g00004 551 SUPERFAMILY Ribonuclease H-like 170 259 IPR012337 -
Gabi1899g00004 551 CDD Rcat_RBR_unk 471 506 - -
Gabi1899g00004 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 385 IPR013083 -
Gabi1899g00004 551 Pfam Zinc finger, C3HC4 type (RING finger) 305 349 IPR018957 GO:0046872
Gabi1899g00004 551 Coils Coil 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1899g00004 Gabi-Chr1899 64836 67438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1899g00004 149 504 C3H Transcription Factor Family AT2G19610 34.072 1.54e-68 225