Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1898g00012 ATGTTGAGGGAAGGTAGCACAAACATTGTCAATGGAAACTGGTCACGTGTCTGTGACACGTGCCGGTCCGCAGCATGCACCGTGTACTGCCATGATGACTCGGCGTACCTATGTTCACGTTGTGATGCTCAAATCCATGAAGCTAACTTCATGGCTTCAAGACACAAACGTGTGTTTGTGTGTGAAGCTTGTGAACGTGCCCCTGCATCGTTTCTATGCAAAGCTGATGCTGCTTCTCTTTGTTCTTCTTGTGATGCTGAAATACACTCAGCAAATCCACTAGCTAGTCGCCACCACCGTGTGCCTGTTCTTCCTTTCTCTAATAAAGAAGAACAAGATCATGGTTGTTTTGTAGGTAATGGAAGTGAGGAAGAGGAAGAGGAAGAGGTTTTTGATGAAGAAGATGATGAGGCAGAAGCTGCATCATGGTTGTTGTTAAATCCTTCAAAGAATGATAACAATGAGAGTAAAAGTGATAATAATAATAATGGGTTCTTGTTTGGTGAGTATTTGGACCTTGTGGATTGTAACTCATGTGGTGGTGATGATGACAATCAGAAACAGTTCAGTACTGTTCATTATAATGATTGCAGTGTCCCTCACAAGAGTTATGTAGTGAATGGTGTTGTTCCAGTTCAGAATCAGATGGAACTTCAAACTGGTCTGGTGTTTGAATCATCAAAAGCTGCCTTCAGTTACAATGGTTCTGCAAGCCAAAGTGTCTCAATTTCATCAACGGATGTCGGCATTGTACCAGAATCAACAATCAGCGATCTCTCAATTTCCCATTCAAAATCCTCAATAGGCACAGTGGACCTATTTTCAGGACCTCCCATTTTGATGCCTTCCTATCTTACTTACAGGGAGGCAAGAGTTTTAAGATATAAAGAGAAAAAGAAGACAAGAAAATTTGAAAAGAAAATCAGATATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGAATTAAAGGTCGATTTGCAAAGAGAACTGATGTAGAAGCTGAAGTGGATCAAATGTTCTCCACAACTCTAATTACAGAAGCTGGATATAGTGTTGTTCCCTCTTTCTGA 1074 0.4143 MLREGSTNIVNGNWSRVCDTCRSAACTVYCHDDSAYLCSRCDAQIHEANFMASRHKRVFVCEACERAPASFLCKADAASLCSSCDAEIHSANPLASRHHRVPVLPFSNKEEQDHGCFVGNGSEEEEEEEVFDEEDDEAEAASWLLLNPSKNDNNESKSDNNNNGFLFGEYLDLVDCNSCGGDDDNQKQFSTVHYNDCSVPHKSYVVNGVVPVQNQMELQTGLVFESSKAAFSYNGSASQSVSISSTDVGIVPESTISDLSISHSKSSIGTVDLFSGPPILMPSYLTYREARVLRYKEKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEAGYSVVPSF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1898g00012 357 SMART bboxneu5 61 103 IPR000315 GO:0008270
Gabi1898g00012 357 SMART bboxneu5 13 60 IPR000315 GO:0008270
Gabi1898g00012 357 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 344 IPR045281 GO:0009909
Gabi1898g00012 357 CDD Bbox1_BBX-like 17 60 - -
Gabi1898g00012 357 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Gabi1898g00012 357 ProSiteProfiles CCT domain profile. 288 330 IPR010402 GO:0005515
Gabi1898g00012 357 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Gabi1898g00012 357 Pfam B-box zinc finger 59 102 IPR000315 GO:0008270
Gabi1898g00012 357 Pfam CCT motif 288 330 IPR010402 GO:0005515
Gabi1898g00012 357 CDD Bbox1_BBX-like 60 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1898g00012 Gabi-Chr1898 182506 185622 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1898g00012 1 357 C2C2-CO-like Transcription Factor Family AT3G02380 52.547 7.12e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gabi1898g00012 zf-B_box 2.8e-07 No_clan