Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1898g00011 ATGGGAATAAAAGCTTCTCTAGTGGATCCTCATGGTATTCTTGATAATTGGGATGGGGATGCAGTTGATCCATGTAGTTGGAATATGGTCACATGTTCCCCTGAGAACCTTGTCATTAGCCTTGGCATTCCCAGTCAGAATTTATCTGGTACTCTATCTCCAAGCATAGGAAACCTAACCAATCTTCACACTGTGGTGCTGCAAGATAACAACATAACTGGACCAATCCCTTCAGAGATTGGAAAACTTTCCAAGCTTCAAAGTCTTGATCTCTCTGATAACTTCTTCAATGGGGAAATTCCTCCCTCTCTGGGTCACCTGAGAAGCCTCCAATACCTGAGGCTTAATAATAACAGTTTTTGTGGGGAATGCCCAGAGTCACTGGCTAACATGGCACAGCTTGCATTTCTTGACTTGTCCTACAACAATTTGAGTGGCCCTGTACCCAGAATTTTAGCCAAATCATTCAGTATTCTTGGAAACCCCCTTGTCTGTGCCACAGGAAAAGAATCAAAGTGCCCTGGGATGACACTCATGCCTATCAATATATTTGCTTCCCTAGATGCTATACCATCAGGCAGACCAAAAACTCACAAAATAGCCATAGCCTTTGGTTTGAGTATGGGATGCCTCTGCTCAATAGTTCTTGGTTTTGGACTTGTTCTATGGAGGAGGCACAAGCATAATCAACCGGCATTCTTTGATGTCAAAGACCGGCATCATGAAGAAGTCTACCTTGGGAACTTGAAGAGGTTCCAATTAAGAGAACTCCAGATTGCTACTAACAACTTCAGCAACAAAAACATATTGGGGAAGGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCCAAGATGGCACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCAACTGGGGGAGAGATACAATTTCAAACTGAAGTTGAAATGATAAGCTTGGCAGTGCACAGAAACCTCCTTAAACTTTATGGATTTTGTATGACACCAACAGAAAGACTTTTAGTTTATCCATACATGTCCAATGGCAGTGTTGCTTCTAGGCTCAAGGGTGAGCTCAATGGTAAACCAGTGTTGGACTGGGGCACAAGGAAGCAAATTGCCTTAGGAGCTGCAAGGGGACTACTATACCTTCATGAGCAGTGTGATCCAAAGATAATCCATAGAGATGTAAAAGCTGCAAATATATTGCTTGATGACTATTGTGAGGCAGTGGTTGGAGATTTTGGGTTGGCAAAGCTTTTAGATCATCAAGATTCACATGTCACAACTGCAGTGAGGGGCACAGTGGGGCATATTGCACCAGAGTATCTTTCCACAGGACAATCTTCTGAGAAGACTGATGTCTTTGGATTTGGCATTCTGCTTCTTGAATTGATCACAGGCCAGAGAGCTCTAGAATTTGGAAAAGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAAGAGAAGAAGCTTGAAGTACTTGTTGACAAGGATCTTAAGAACAACTATGACAGGATTGAGCTTGAGGAAATTGTTCAAGTAGCTCTCTTATGTACACAATATCTTCCAGGCCACAGACCCAAAATGTCTGAAGTTGTACGCATGCTTGAAGGTGATGGGCTAGCAGAGAAATGGGAAGCTTCTCAAAGTGCAGACACTACCACCAAGTGCAAAACACATGAGTTCGCTTCATCAGATCGGTTTTCTGATCTTACCGATGACTCTTCATTGTTAGTCCAAGCCATGGAGCTCTCAGGCCCAAGGTGA 1770 0.4305 MGIKASLVDPHGILDNWDGDAVDPCSWNMVTCSPENLVISLGIPSQNLSGTLSPSIGNLTNLHTVVLQDNNITGPIPSEIGKLSKLQSLDLSDNFFNGEIPPSLGHLRSLQYLRLNNNSFCGECPESLANMAQLAFLDLSYNNLSGPVPRILAKSFSILGNPLVCATGKESKCPGMTLMPINIFASLDAIPSGRPKTHKIAIAFGLSMGCLCSIVLGFGLVLWRRHKHNQPAFFDVKDRHHEEVYLGNLKRFQLRELQIATNNFSNKNILGKGGFGNVYKGVLQDGTLVAVKRLKDGNATGGEIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGELNGKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEVLVDKDLKNNYDRIELEEIVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQSADTTTKCKTHEFASSDRFSDLTDDSSLLVQAMELSGPR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1898g00011 589 Pfam Protein kinase domain 265 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1898g00011 589 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1 175 - -
Gabi1898g00011 589 Gene3D Transferase(Phosphotransferase) domain 1 341 557 - -
Gabi1898g00011 589 Gene3D Phosphorylase Kinase; domain 1 233 340 - -
Gabi1898g00011 589 FunFam Somatic embryogenesis receptor kinase 1 233 340 - -
Gabi1898g00011 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Gabi1898g00011 589 SMART serkin_6 264 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1898g00011 589 SUPERFAMILY Protein kinase-like (PK-like) 241 538 IPR011009 -
Gabi1898g00011 589 Pfam Leucine rich repeat 60 119 IPR001611 GO:0005515
Gabi1898g00011 589 ProSitePatterns Protein kinases ATP-binding region signature. 270 292 IPR017441 GO:0005524
Gabi1898g00011 589 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 548 - -
Gabi1898g00011 589 Pfam Leucine rich repeat N-terminal domain 2 33 IPR013210 -
Gabi1898g00011 589 Gene3D Ribonuclease Inhibitor 1 175 IPR032675 -
Gabi1898g00011 589 SUPERFAMILY L domain-like 3 266 - -
Gabi1898g00011 589 FunFam Somatic embryogenesis receptor-like kinase 1 341 557 - -
Gabi1898g00011 589 ProSiteProfiles Protein kinase domain profile. 264 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1898g00011 Gabi-Chr1898 168360 171892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1898g00011 1 589 Receptor kinase-like Gene Family AT5G16000 76.884 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi1898g00011 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1898g00011 - - gmx:100806650 1057.36