Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1898g00010 ATGGGAATAAAAGCTTCTCTAGTGGATCCTCATGGTATTCTTGATAATTGGGATGGGGATGCAGTTGATCCATGTAGTTGGAATATGGTCACATGTTCCCCTGAGAACCTTGTCATTAGCCTTGGCATTCCCAGTCAGAATTTATCTGGTACTCTATCTCCAAGCATAGGAAACCTAACCAATCTTCACACTGTGGTGCTGCAAGATAACAACATAACTGGACCAATCCCTTCAGAGATTGGAAAACTTTCCAAGCTTCAAAGTCTTGATCTCTCTGATAACTTCTTCAATGGGGAAATTCCTCCCTCTCTGGGTCACCTGAGAAGCCTCCAATACCTGAGGCTTAATAATAACAGTTTTTGTGGGGAATGCCCAGAGTCACTGGCTAACATGGCACAGCTTGCATTTCTTGACTTGTCCTACAACAATTTGAGTGGCCCTGTACCCAGAATTTTAGCCAAATCATTCAGTATTCTTGGAAACCCCCTTGTCTGTGCCACAGGAAAAGAATCAAAGTGCCCTGGGATGACACTCATGCCTATGTCCATGAACTTGAACAGTACTGGGGATGCTATACCATCAGGCAGACCAAAAACTCACAAAATAGCCATAGCCTTTGGTTTGAGTATGGGATGCCTCTGCTCAATAGTTCTTGGTTTTGGACTTGTTCTATGGAGGAGGCACAAGCATAATCAACCGGCATTCTTTGATGTCAAAGACCGGCATCATGAAGAAGTCTACCTTGGGAACTTGAAGAGGTTCCAATTAAGAGAACTCCAGATTGCTACTAACAACTTCAGCAACAAAAACATATTGGGGAAGGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCCAAGATGGCACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCAACTGGGGGAGAGATACAATTTCAAACTGAAGTTGAAATGATAAGCTTGGCAGTGCACAGAAACCTCCTTAAACTTTATGGATTTTGTATGACACCAACAGAAAGACTTTTAGTTTATCCATACATGTCCAATGGCAGTGTTGCTTCTAGGCTCAAGGGTGAGCTCAATGGTAAACCAGTGTTGGACTGGGGCACAAGGAAGCAAATTGCCTTAGGAGCTGCAAGGGGACTACTATACCTTCATGAGCAGTGTGATCCAAAGATAATCCATAGAGATGTAAAAGCTGCAAATATATTGCTTGATGACTATTGTGAGGCAGTGGTTGGAGATTTTGGGTTGGCAAAGCTTTTAGATCATCAAGATTCACATGTCACAACTGCAGTGAGGGGCACAGTGGGGCATATTGCACCAGAGTATCTTTCCACAGGACAATCTTCTGAGAAGACTGATGTCTTTGGATTTGGCATTCTGCTTCTTGAATTGATCACAGGCCAGAGAGCTCTAGAATTTGGAAAAGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAAGAGAAGAAGCTTGAAGTACTTGTTGACAAGGATCTTAAGAACAACTATGACAGGATTGAGCTTGAGGAAATTGTTCAAGTAGCTCTCTTATGTACACAATATCTTCCAGGCCACAGACCCAAAATGTCTGAAGTTGTACGCATGCTTGAAGGTGATGGGCTAGCAGAGAAATGGGAAGCTTCTCAAAGTGCAGACACTACCACCAAGTGCAAAACACATGAGTTCGCTTCATCAGATCGGTTTTCTGATCTTACCGATGACTCTTCATTGTTAGTCCAAGCCATGGAGCTCTCAGGCCCAAGGTGA 1776 0.4324 MGIKASLVDPHGILDNWDGDAVDPCSWNMVTCSPENLVISLGIPSQNLSGTLSPSIGNLTNLHTVVLQDNNITGPIPSEIGKLSKLQSLDLSDNFFNGEIPPSLGHLRSLQYLRLNNNSFCGECPESLANMAQLAFLDLSYNNLSGPVPRILAKSFSILGNPLVCATGKESKCPGMTLMPMSMNLNSTGDAIPSGRPKTHKIAIAFGLSMGCLCSIVLGFGLVLWRRHKHNQPAFFDVKDRHHEEVYLGNLKRFQLRELQIATNNFSNKNILGKGGFGNVYKGVLQDGTLVAVKRLKDGNATGGEIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGELNGKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEVLVDKDLKNNYDRIELEEIVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQSADTTTKCKTHEFASSDRFSDLTDDSSLLVQAMELSGPR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1898g00010 591 SMART serkin_6 266 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1898g00010 591 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1 175 - -
Gabi1898g00010 591 Pfam Leucine rich repeat 60 119 IPR001611 GO:0005515
Gabi1898g00010 591 SUPERFAMILY Protein kinase-like (PK-like) 243 540 IPR011009 -
Gabi1898g00010 591 Gene3D Phosphorylase Kinase; domain 1 235 342 - -
Gabi1898g00010 591 Pfam Protein kinase domain 267 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1898g00010 591 Gene3D Transferase(Phosphotransferase) domain 1 343 559 - -
Gabi1898g00010 591 ProSitePatterns Protein kinases ATP-binding region signature. 272 294 IPR017441 GO:0005524
Gabi1898g00010 591 Pfam Leucine rich repeat N-terminal domain 2 33 IPR013210 -
Gabi1898g00010 591 Gene3D Ribonuclease Inhibitor 1 175 IPR032675 -
Gabi1898g00010 591 FunFam Somatic embryogenesis receptor-like kinase 1 343 559 - -
Gabi1898g00010 591 ProSiteProfiles Protein kinase domain profile. 266 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1898g00010 591 SUPERFAMILY L domain-like 3 267 - -
Gabi1898g00010 591 FunFam Somatic embryogenesis receptor kinase 1 235 342 - -
Gabi1898g00010 591 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 550 - -
Gabi1898g00010 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1898g00010 Gabi-Chr1898 168360 171892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1898g00010 1 591 Receptor kinase-like Gene Family AT5G16000 78.057 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi1898g00010 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1898g00010 - - gmx:100806650 1074.31