Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1896g00004 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCCAATAGCCCCCACCACGAGCAACACGAAATCTCCCAAGATTTGATTCTGGATGATTATGCTTCTCTGGATGTAAACGATTGTGATAAAAAACTCAGCACTAGAAAGAAACTATCTTATGGGGGTGATAAGAATCATGGTGCTTCTAATGAACAGAAGAAGAAGAAGATTGTTCATAGAGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCAACCTTTTATGCCTCTCTCAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATGTCTGATCACATGAACGAGGCAGTGAATTACATAAAACACATGCAGAATAATATCAAAGAACTTGGTGCCAAGAGAGATGAACTGAAGAAACTCTCCAATTCCAAGATGGAAAACCAAGAGAGCAAGCACACATCTTGCAACTTCACTCTCCATGAGAATAATGGTATTGTGGGAATCGAAATCACCAGTGGTTTCAGAGAGGAAAGTCTCAAACTTTCAAAGTTACTTCAATTACTGCTTGATGAAGGACTTGAAGTTGTTAGTTGCCTTTCAACCGATGTTAATGGAAAATTGTTCCAAAGTGTCCAGTGCGAGGTTAGCAATTCCAACAGTGTAGATTTATCTGAGCTGAAAAGGAAAGTTTCCAATGTTATTCCAACACTTAGATCTTCAGATTAA 717 0.3961 MFPLQRGNELVIQFSNSPHHEQHEISQDLILDDYASLDVNDCDKKLSTRKKLSYGGDKNHGASNEQKKKKIVHREIERQRRQEMATFYASLRSLLPLEFIKGKRSMSDHMNEAVNYIKHMQNNIKELGAKRDELKKLSNSKMENQESKHTSCNFTLHENNGIVGIEITSGFREESLKLSKLLQLLLDEGLEVVSCLSTDVNGKLFQSVQCEVSNSNSVDLSELKRKVSNVIPTLRSSD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1896g00004 238 CDD bHLH_AtORG2_like 69 139 - -
Gabi1896g00004 238 Coils Coil 117 137 - -
Gabi1896g00004 238 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 61 229 - -
Gabi1896g00004 238 FunFam Transcription factor bHLH126 60 148 - -
Gabi1896g00004 238 MobiDBLite consensus disorder prediction 51 71 - -
Gabi1896g00004 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 135 IPR036638 GO:0046983
Gabi1896g00004 238 SMART finulus 74 126 IPR011598 GO:0046983
Gabi1896g00004 238 Pfam Helix-loop-helix DNA-binding domain 69 121 IPR011598 GO:0046983
Gabi1896g00004 238 Gene3D - 59 152 IPR036638 GO:0046983
Gabi1896g00004 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 120 IPR011598 GO:0046983
Gabi1896g00004 238 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1896g00004 Gabi-Chr1896 183914 184988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1896g00004 73 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 42.515 7.19e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1896g00004 HLH 5.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1896g00004 - - gmx:100780888 340.117