Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1896g00003 ATGGACGAAAACAAGAAGTGGATGCATAAGGAGACAGAAAGACAAAGAAGACAAGAGATGGGAGATCTCTGCACCACCCTTAGATCTCTTCTGCCTGTCGAATATATTAAGGGAAAGCGCTCAAATTCTGATCACGTGAATGAGGCTGTGAATTACATCAACCACCTACGGAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAATAAAAGTATCTAATTTGAGTGCTATTGAAAGCCCTGACAGTGGAAGCTCTGGTACTACCCATCTTCCACCCTTTGTTATTGTTCATCCTTTACCGGGAGGCCTTATTGAGATTATGTGCAATTATAGCTTCAGGAAGTGTGTGTTTCCTTTGTCAAGAGTGCTAGAGATGTTGTTTCAAGAAGGGCTTAACGTGGTTAGTAGTACTTCCACCAAAACAGATGGCAGATTCATGCACACTATACGGTTAGAGGTACCATGTTTGTTTAATTGTGACTAA 489 0.4131 MDENKKWMHKETERQRRQEMGDLCTTLRSLLPVEYIKGKRSNSDHVNEAVNYINHLRNKVKQLQAKRDELIKVSNLSAIESPDSGSSGTTHLPPFVIVHPLPGGLIEIMCNYSFRKCVFPLSRVLEMLFQEGLNVVSSTSTKTDGRFMHTIRLEVPCLFNCD 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1896g00003 162 Coils Coil 46 73 - -
Gabi1896g00003 162 Gene3D - 1 80 IPR036638 GO:0046983
Gabi1896g00003 162 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Gabi1896g00003 162 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Gabi1896g00003 162 FunFam Transcription factor bHLH126 1 83 - -
Gabi1896g00003 162 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 154 - -
Gabi1896g00003 162 SMART finulus 10 62 IPR011598 GO:0046983
Gabi1896g00003 162 CDD bHLH_AtORG2_like 5 81 - -
Gabi1896g00003 162 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 73 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1896g00003 Gabi-Chr1896 155616 156391 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1896g00003 9 161 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 44.231 4.79e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1896g00003 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1896g00003 - - gmx:100795953 238.81