Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1893g00021 ATGGGGTGCCAGCCATTAGAAAAAGCAAAACCAAAATACAGAAAGGGTTTATGGTCACCTGAAGAAGATAATAAGCTCAGAAACCATATCATTCAGCATGGTCATGGTTGCTGGAGCTCTGTCCCCATTAAGGCAGGCTTGCAAAGGAATGGAAAGAGCTGCAGACTAAGGTGGATCAATTACCTGAGGCCAGGATTAAAGAGAGGGGTGTTCAGCAAACAGGAGGAGGATACCATCATGACTCTTCATCACATGTTGGGCAACAAGTGGTCTCAGATAGCACAACATTTGCCAGGAAGGACTGACAATGAGATAAAAAACTACTGGCATTCATATTTGAAAAAGAAAGTGAACAAAGATAAGGAAATGGAATCTCCTAAACAAATTCAGTATGCTAGCTCAAGCTCAGATACAATGGACTATTCACTCTCTCCCCAGAAACTTGCAACTCAAGATCCAAGTTATAATTATAACTCTTCCAATAAGGAGGCCTGTCAGAGCTCATTACCAAAACTGTTTTTTGCTGAGTGGCTTTCATTGGATCAAGTAAATGGTGTTAGCTCTGTGAGCTCAGATGACTCTTTGGTCTTGGTGAATGAATTTGATCAAAAATTTGATCAAAATTCAACTTTCCAAGAAGCTGAAATGCATATATCAGAAGGACTCTTTGGTGAAGAGTATCATAATAGTTTAATTCACAGTTCAGCCGCTGAGGTTTACAATTCACAGCTTAAGTTATCAAACCAAGTGGATGGAAATGACTTCATCCATTGTATACAAGGGGCTGATTTAAATAGCAATTTCAGCCTGAACAATGATGCAATGTATGTATGA 834 0.3945 MGCQPLEKAKPKYRKGLWSPEEDNKLRNHIIQHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGVFSKQEEDTIMTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKVNKDKEMESPKQIQYASSSSDTMDYSLSPQKLATQDPSYNYNSSNKEACQSSLPKLFFAEWLSLDQVNGVSSVSSDDSLVLVNEFDQKFDQNSTFQEAEMHISEGLFGEEYHNSLIHSSAAEVYNSQLKLSNQVDGNDFIHCIQGADLNSNFSLNNDAMYV 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1893g00021 277 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gabi1893g00021 277 CDD SANT 71 113 IPR001005 -
Gabi1893g00021 277 CDD SANT 18 62 IPR001005 -
Gabi1893g00021 277 Gene3D - 70 140 - -
Gabi1893g00021 277 MobiDBLite consensus disorder prediction 127 142 - -
Gabi1893g00021 277 FunFam MYB transcription factor 70 141 - -
Gabi1893g00021 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gabi1893g00021 277 Gene3D - 15 67 - -
Gabi1893g00021 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Gabi1893g00021 277 PANTHER MYB DOMAIN PROTEIN 55 7 222 - -
Gabi1893g00021 277 SMART sant 67 115 IPR001005 -
Gabi1893g00021 277 SMART sant 14 64 IPR001005 -
Gabi1893g00021 277 MobiDBLite consensus disorder prediction 119 142 - -
Gabi1893g00021 277 FunFam MYB transcription factor 12 68 - -
Gabi1893g00021 277 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi1893g00021 277 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Gabi1893g00021 277 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gabi1893g00021 277 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1893g00021 Gabi-Chr1893 225725 229029 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1893g00021 7 179 MYB Transcription Factor Family AT5G52260 55.851 4.14e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1893g00021 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1893g00021 K09422 - gmx:100803537 439.113