Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1893g00020 ATGGGGAAAGCACCATGTTGTGATAAACATGGAGTGAGGAGGGGAGCTTGGACTCCTGAAGAAGATGAAGCATTAGTTGAGTACATTAAGAAGCATGGCCATGGAAGTTGGCGTACACTCCCCAAGCAAGCAGGTCTCCTTAGATGTGGAAAAAGTTGTCGACTTCGTTGGATAAATTATCTTCGCCCTGACATAAAGCGTGGTCAATTTACTACTGAGGAAGAAAGTACAATTATTCAGCTTCATGGCATGCTTGGAAACAGGTGGGCTGCTATAGCATCCCAACTTCCAGGAAGAACAGACAATGAAATTAAAAACTATTGGAACACCCAACTTAAGAAGCGTCTCCCTCGGTTAGGACATTCCCTAGGGGCACAACACCCCTCTTTCAGTCCTGATCATGGTGTTGTTTTAAAATCTGAATCTCCATCTACACGTCACATGGTACAATGGGAAAGTGCAAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCAGCATTGCTTAATTCATGGTCAACAAATGAGACATACCCGGATTACTTTCTTCAACTTTGGCATTCTGAAGTAGGACAGTCATTTCGCATGATCAAAGGAAAAGGAGAAGTATGTCAAAGCCCCATCTCACAGGGATCATCATCCTCAAAATTGGAGTCATGTTCAGATGTCTCATTGCAGGTCAAAAACAACACTGGAAGCAGTGCCTTTGCAAACAAGTCACCAGAACAAGCTAGTAGTTATAAACCAAAGCTTGAAGATGGAAAAACTGGGTCAGATTCAGGCTATTATGAGTTTCTTGATACTTCTGATTCTGCATTAAATCACTTCCTAGACATGCCTGATGGTGAGATAGGATCCTTAGGACAGACTGAAAGTTTCCTCAATACCCTTTATGGTAGTTGTGACTAA 909 0.4257 MGKAPCCDKHGVRRGAWTPEEDEALVEYIKKHGHGSWRTLPKQAGLLRCGKSCRLRWINYLRPDIKRGQFTTEEESTIIQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTQLKKRLPRLGHSLGAQHPSFSPDHGVVLKSESPSTRHMVQWESARVEAEARLSMESALLNSWSTNETYPDYFLQLWHSEVGQSFRMIKGKGEVCQSPISQGSSSSKLESCSDVSLQVKNNTGSSAFANKSPEQASSYKPKLEDGKTGSDSGYYEFLDTSDSALNHFLDMPDGEIGSLGQTESFLNTLYGSCD 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1893g00020 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 233 - -
Gabi1893g00020 302 Gene3D - 69 116 - -
Gabi1893g00020 302 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi1893g00020 302 CDD SANT 16 61 IPR001005 -
Gabi1893g00020 302 Gene3D - 14 66 - -
Gabi1893g00020 302 MobiDBLite consensus disorder prediction 232 257 - -
Gabi1893g00020 302 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi1893g00020 302 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi1893g00020 302 FunFam Myb transcription factor 11 67 - -
Gabi1893g00020 302 SMART sant 13 63 IPR001005 -
Gabi1893g00020 302 SMART sant 66 114 IPR001005 -
Gabi1893g00020 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi1893g00020 302 CDD SANT 70 110 IPR001005 -
Gabi1893g00020 302 FunFam MYB transcription factor 69 116 - -
Gabi1893g00020 302 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi1893g00020 302 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi1893g00020 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1893g00020 Gabi-Chr1893 205668 209894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1893g00020 1 280 MYB Transcription Factor Family AT3G61250 54.167 2.42e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1893g00020 Myb_DNA-binding 6.9e-16 CL0123