Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1892g00023 ATGAAGTGTTTCTTCTTCAAAGATAAATCCAAATCTGCCCCGGAATTGCAGAACCAAGGCAAGAAGAAAAACCCGGTTTTGAATCGCCCAACAAACTCCACAGGCTCATTATCATCACCAAAGAGCGTGAAGGACTTGTACAATGAGAAAGAACACAACTTCAGAGTTTTTACTTTTCAAGAGCTAAGAGATGCTACCAACGGTTTCAACAGGATGCTGAAGATTGGAGAAGGGGGTTTTGGGAGTGTATATAGAGGATCCATTAGGCCTCAAGATGGAAAAGGTGATCCAATTGTAGTTGCTATAAAAAGGCTTAACCCTCGTGGCTTCCAGGGTCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTTAGTCACCCAAATTTGGTTAAGCTTTTGGGATATTGCTCAGTAGATGGAGAAAGAGGAAAACAGCGGCTGTTGGTGTATGAGTTCATGCCCAACAGGAGCTTGGACGATCACCTCTTCAACAAAGCTCTTCCTCCCCTGCCTTGGAAAACAAGATTGGAGATCATGCTTGGTGCTGCTCAAGGATTAGCTTATCTACATGAGGGACTGGAGATTCAGGTGATCTACCGAGATTTCAAATCTTCAAACGTTCTTTTGGATGCGGATTTCCACCCAAAGCTCTCAGATTTCGGTCTTGCTAGAGAAGGTCCACAAGGTGATAAGACTCATGTTTCTACTGCGGTAGTTGGGACACAAGGATATGCTGCACCAGAGTACATTGAAACAGGTCATCTCAAAGTTCAAAGTGACATGTGGAGTTTTGGTGTTGTACTCTATGAGATACTCACAGGAAGGCGTTCATTGGAAAGAAGCCGTCCAACAGCAGAACAAAAGCTACTAGATTGGGTTAAACAATATCCTGCTGACAGTAGCAGATTCAACATGATAATGGACCCACGTCTCCTGAACCAATCATATTCTCTTGGTTCAGCTCGCAAAGTTGCCAAGTTGGCTGATAGCTGCTTGAAGAAGAATCCAGAAGATAGACCATCCATGAATCAGATAGTGGAAAGCTTGAAGCAAGCATTGCTATGTTCAGAAACATCAAACACTTCTCAAAATGCTGCCGAATCATCTCGGTCTAAATTGGTTCGAAAAGGTAAATAG 1143 0.4296 MKCFFFKDKSKSAPELQNQGKKKNPVLNRPTNSTGSLSSPKSVKDLYNEKEHNFRVFTFQELRDATNGFNRMLKIGEGGFGSVYRGSIRPQDGKGDPIVVAIKRLNPRGFQGHKEWLAEVQFLSIVSHPNLVKLLGYCSVDGERGKQRLLVYEFMPNRSLDDHLFNKALPPLPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDADFHPKLSDFGLAREGPQGDKTHVSTAVVGTQGYAAPEYIETGHLKVQSDMWSFGVVLYEILTGRRSLERSRPTAEQKLLDWVKQYPADSSRFNMIMDPRLLNQSYSLGSARKVAKLADSCLKKNPEDRPSMNQIVESLKQALLCSETSNTSQNAAESSRSKLVRKGK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1892g00023 380 Gene3D Transferase(Phosphotransferase) domain 1 155 377 - -
Gabi1892g00023 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Gabi1892g00023 380 ProSiteProfiles Protein kinase domain profile. 69 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1892g00023 380 MobiDBLite consensus disorder prediction 17 42 - -
Gabi1892g00023 380 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 155 366 - -
Gabi1892g00023 380 SUPERFAMILY Protein kinase-like (PK-like) 51 351 IPR011009 -
Gabi1892g00023 380 Gene3D Phosphorylase Kinase; domain 1 48 154 - -
Gabi1892g00023 380 Pfam Protein kinase domain 71 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1892g00023 380 MobiDBLite consensus disorder prediction 360 380 - -
Gabi1892g00023 380 CDD STKc_IRAK 75 353 - -
Gabi1892g00023 380 ProSitePatterns Protein kinases ATP-binding region signature. 75 103 IPR017441 GO:0005524
Gabi1892g00023 380 MobiDBLite consensus disorder prediction 1 42 - -
Gabi1892g00023 380 PANTHER OS01G0588500 PROTEIN-RELATED 34 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1892g00023 Gabi-Chr1892 154581 157995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1892g00023 3 351 Glycoside Hydrolase AT3G07070 42.936 4.43e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi1892g00023 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1892g00023 - - gmx:100305403 645.58