Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1892g00003 ATGGAGGAACGGTATGAGCCATTGAAGGACCTTGGTTCTGGGAATTTTGGAGTGGCTAGGTTGGCCAAAGACAAGAAGACTGCAGAGCTTGTTGCTGTTAAATACATAGAGAGGGGTAAAAAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCATCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTCTTCCTGACCCCTACTCATTTAGCTATTGTCTTGGAGTATGCTTCAGGTGGTGAACTCTTTGAGAGGATATGCACCGCTGGTCGATTTAGTGAAGATGAGGCAAGATATTTCTTCCAACAGCTTATATCTGGGGTTAGCTACTGTCATTCAATGGAAATTTGTCACAGAGATCTGAAATTGGAAAACACTCTCTTGGATGGTAATCCATCTCCTCGGCTTAAAATTTGTGACTTCGGTTACTCCAAGGTCCTTGATATTCAATTGCAGTCTGCTTTACTGCACTCTCAACCTAAATCAACTGTTGGAACTCCTGCATACATTGCTCCAGAGGTTCTGTCACGAAAGGAGTATGACGGAAAGATTGCAGATGTTTGGTCCTGTGGTGTGACTCTTTATGTCATGTTAGTTGGTGCATATCCATTTGAAGACCCAGAAGATCCTAGAAATTTCAAAAAGACTATTGGGAGAATAATAGGTGTTCAGTACTCCATACCGGACTATGTACGTGTTTCTACTGAGTGTAGGAATCTTCTCTCTCGTATCTTTGTTGCCAATCCTGCCAAGAGGATCACCATCCCAGAGATAAAACAGAACCCTTGGTTTTTGAAGAATTTGCCTAAAGAGATCATTGAAGCTGAAAGAAAAGGTTTTGAGGAAACAAAGAAAGACCAACCAATCCAGAGTGTTGAAGAAATCATGAGCATCATAAAAGAGGCAAGCATACCAGGACAAGGATCCAAAGCTGGTGATGGTGGGCAAGCTGGCACTGGTTCATTGGAAGTTGTGGATGATGAGGAAATTGATGTTAGTGGTGACTATGAACATGTGTGA 1032 0.4176 MEERYEPLKDLGSGNFGVARLAKDKKTAELVAVKYIERGKKIDENVQREIINHRSLRHPNIIRFKEVFLTPTHLAIVLEYASGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKVLDIQLQSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFKKTIGRIIGVQYSIPDYVRVSTECRNLLSRIFVANPAKRITIPEIKQNPWFLKNLPKEIIEAERKGFEETKKDQPIQSVEEIMSIIKEASIPGQGSKAGDGGQAGTGSLEVVDDEEIDVSGDYEHV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1892g00003 343 SUPERFAMILY Protein kinase-like (PK-like) 3 276 IPR011009 -
Gabi1892g00003 343 SMART serkin_6 5 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1892g00003 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Gabi1892g00003 343 MobiDBLite consensus disorder prediction 307 343 - -
Gabi1892g00003 343 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Gabi1892g00003 343 PANTHER SERINE/THREONINE KINASE 3 291 - -
Gabi1892g00003 343 CDD STKc_SnRK2 4 267 - -
Gabi1892g00003 343 Gene3D Transferase(Phosphotransferase) domain 1 81 275 - -
Gabi1892g00003 343 ProSiteProfiles Protein kinase domain profile. 5 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1892g00003 343 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Gabi1892g00003 343 FunFam Serine/threonine-protein kinase SRK2E 81 276 - -
Gabi1892g00003 343 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Gabi1892g00003 343 Pfam Protein kinase domain 5 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1892g00003 Gabi-Chr1892 26247 30465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1892g00003 4 272 CBL-interacting serine-threonine protein kinases AT5G25110 44.689 3.92e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gabi1892g00003 Pkinase 6.5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1892g00003 K14498 - gmx:100782714 630.557