Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1890g00014 ATGGAAGAAGATCAAGAACTCAAACACGCGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCCTTGGGAGGTCACGTGAGGTCTCACGTGATCAATGTTTCCGCTGAGACAGAGGAGAAGTTTGCAACAACGAGGAAGCTTTCATCTCTTAACAACAACAACAACAACAACAATGATGGAGATCACACAGGAAGAGAAGGTTCTGAAGCAGGAACTAATAATGCTGGTTATGGTCTTAGAGAAAACCCCAAGAAAACTTGGAGACTCACAGATAAAAGTGAAGACACTTCTGTGTTGGACAAGTTCTGCAGAGAATGTGGTAAAGGGTTTCCCTCTTGGAAAGCTTTGTTTGGTCACATGAAGTGCCATTCTGAGAAAGAAAGAGTGTCCAATAACAGCTTCGGTGATCAAGATTCATGGACTAACAATGCTAGCCAATCTGATGATGAAGCCACTGCTCCCAATCGAAGGAAAAGATCCAAGAGAAGAACAAGGTACCTGACCCCATCAACTTCTTCTTTGTCCTTTGCTACCAATCCTTCATCTTCTGTTTCTGAGGCTGAACATGAACACGAAGAGGTTGCTATGAGCTTGATGATGCTTAGCAGGGATTTGAGTCCTTGGGGTGGTTTGGATTTTGTTGTTGAGTCCTCTCACAATAACTCTTTGCACTTGGAAGCATCATCTTCTGTTCCCACTAATAATATGGTTTCTAAGATTGATGGCAAGAGGCTTGGCAATTGGGTTTCTTCAAATCTCAACTCCAAAGGAAAAAGTTCAGAACTTTTGGATACTGAGAGTCCTGTGAATGGATTTAGGATGAACAAAACAAGAGTTTCCATTAATGGGTTCATCAAGAATGGGAAGGATAAGAATTCTGAGCTTGATTCTCAGCCTGCATATGATGCCAATGGAACAGAATTAGTTTTGTCAAATTCGGCTACTAGTAAAAAGTACACTCCAATCAAGGCAAAGTTTTTGGATTCTGAATCCAAGTCAAGTTCTTTGAAGAATTGTGTTAGCAAGCCTTCAGAAGCTGAATTCAGCAAGAGCTCTCACAAGAGAGGCAAGTTTGAGTGTACTACTTGCAACAAAATCTTCCACTCCTACCAAGCTCTTGGAGGCCATAGAGCTAGTCATAAGAAGATCAAAGGTTGCTTTGCTTCAAGAAGTGAAAACAGCATTGAATTTGAAGCAGACCTCTACCCTGACCCAACAACAACAACAACAGAAAGCAAGCTCATGAAGAATAGTGATATCAATGAATATAAGGAAGAACATGAAGTGGATAGAGTCTCCAAGAAGAACAAAGGGCACGAGTGCCCAATTTGCCTCAAGGTTTTTCCTTCAGGGCAAGCCTTGGGTGGCCACAAAAGATCTCATTTGGCTGGTGGGTTTGAGGGTAGAAACTTTCAAAGTCAAATTCAGGAATCAGTCCCAGAAATTAGGGAATTCCTTGATCTTAATATTCCTGCTCCTACAGATGATGAAAGTAATAGCAATGTCACTGAGCCTTATAGACCCTGGTGGGTACTTGGAGGTATCCACAAGCAGGAGGCACTGGTAGGCCTCATGTCTAACTAA 1590 0.422 MEEDQELKHACKFCSKSFPCGRSLGGHVRSHVINVSAETEEKFATTRKLSSLNNNNNNNNDGDHTGREGSEAGTNNAGYGLRENPKKTWRLTDKSEDTSVLDKFCRECGKGFPSWKALFGHMKCHSEKERVSNNSFGDQDSWTNNASQSDDEATAPNRRKRSKRRTRYLTPSTSSLSFATNPSSSVSEAEHEHEEVAMSLMMLSRDLSPWGGLDFVVESSHNNSLHLEASSSVPTNNMVSKIDGKRLGNWVSSNLNSKGKSSELLDTESPVNGFRMNKTRVSINGFIKNGKDKNSELDSQPAYDANGTELVLSNSATSKKYTPIKAKFLDSESKSSSLKNCVSKPSEAEFSKSSHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRSENSIEFEADLYPDPTTTTTESKLMKNSDINEYKEEHEVDRVSKKNKGHECPICLKVFPSGQALGGHKRSHLAGGFEGRNFQSQIQESVPEIREFLDLNIPAPTDDESNSNVTEPYRPWWVLGGIHKQEALVGLMSN 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1890g00014 529 ProSitePatterns Zinc finger C2H2 type domain signature. 443 463 IPR013087 -
Gabi1890g00014 529 MobiDBLite consensus disorder prediction 135 152 - -
Gabi1890g00014 529 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 512 - -
Gabi1890g00014 529 SMART c2h2final6 9 31 IPR013087 -
Gabi1890g00014 529 SMART c2h2final6 103 125 IPR013087 -
Gabi1890g00014 529 SMART c2h2final6 360 382 IPR013087 -
Gabi1890g00014 529 SMART c2h2final6 441 463 IPR013087 -
Gabi1890g00014 529 MobiDBLite consensus disorder prediction 131 192 - -
Gabi1890g00014 529 ProSitePatterns Zinc finger C2H2 type domain signature. 362 382 IPR013087 -
Gabi1890g00014 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 360 387 IPR013087 -
Gabi1890g00014 529 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Gabi1890g00014 529 MobiDBLite consensus disorder prediction 50 91 - -
Gabi1890g00014 529 MobiDBLite consensus disorder prediction 168 186 - -
Gabi1890g00014 529 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Gabi1890g00014 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 441 463 IPR013087 -
Gabi1890g00014 529 Pfam C2H2-type zinc finger 441 465 - -
Gabi1890g00014 529 Pfam C2H2-type zinc finger 9 31 - -
Gabi1890g00014 529 Pfam C2H2-type zinc finger 360 384 - -
Gabi1890g00014 529 Pfam C2H2-type zinc finger 105 127 - -
Gabi1890g00014 529 Gene3D Classic Zinc Finger 357 463 - -
Gabi1890g00014 529 SUPERFAMILY beta-beta-alpha zinc fingers 9 125 IPR036236 -
Gabi1890g00014 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 31 IPR013087 -
Gabi1890g00014 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Gabi1890g00014 529 SUPERFAMILY beta-beta-alpha zinc fingers 360 463 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1890g00014 Gabi-Chr1890 165616 167644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1890g00014 347 508 C2H2 Transcription Factor Family AT2G45120 39.157 2.14e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1890g00014 zf-C2H2_6 3.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1890g00014 - - aprc:113852386 649.818