Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1890g00012 ATGTACCCACAGCAACAACACCATGTTCCCTACACCAACATACAGCAACCATACTATTCTGCAAACCCATTCTTGTTATCGTTCCCTTTCCCCTCCGATTCTGCTCTTCACCCTCCTGGCATCATCGACCCACTTGGAAATTCAACACCTTCTGCTGCTTATGGAGCCCAAACAACAGATTCTCAGAACTGGATCGTCAAACAAGCTGACCCCATCAGATATGATCTTGCTGTTGGTTCATCACATGAGACTTTGGCAGCATCAGCAAATTTGCTTTCCACATGGAATGACACATGGTCACATCAATATTTCACTAATAATATTGCAGGAATGTTACCTAACCAGACCAAAGACACGAAACCAATGAGATGTGAAGTTTGCAAAATTGATTGTAACAGCAAAGATGTTTATGATAAGCACATAATAGGGAAGAAACACCAGAGGAATTTGCAGGAACAGATTAATTCCACCAATACATTATTAGCAGGACCCTCTCATGTGAGTGTACAAAGTTACACAAGTAGTGTCCAAGCACAAGTGTTAACTGGTGCCGTAGGAAAGGACTTAGAGTCTAAGAAACGGAAGCTTTTGAATGGTGGTGCGCCCATTGATTCTGTAAAGGTTTGTACGGTATGCAACATTGTGTGCAATAGTCAAGAAGTATTTAACAAACATCTAGCAGGAAAAAAGCATGCTGCTCAGGTTGGCTTGATGTCTAATAATGGGATTGGTCCATATATTGCTGCATTTAAGCGACAAGGTATTGGTCCTTGGAAGAAAGCTCCAAAGAAAATCAAGGTTGCTCAATCAGCATGGTGTGAAGTTTGTAAGATTAATTGTAATAGCAGGGATGTGTATATTGTACACTTATCTGGGAAGAAACACCTGAAGAACTTGGAGAAACTATCAAAACCAAAAATTGATGCTGCTGCTGGTGCTGCTACCACCACAGCAAATGCTTTGCAACTTGCGGCGAATCCGGTAATCGGGCCACAGGAAAAGCCAGATTCTGATAAACTGAAATCACAGAAGGAACCAGAAATGGATATCGAGACAAAGAAGCGTAAAGTTGTAGAAGGGGGGGCTGCAGCAGGGGCTGTTAGATTTTGCACTCTATGCAATGTGGTATGTAACAGCGAAACGGTTTTTAATGCTCACCTTACTGGGCATAAACATGGTGCTATGGTGAAGAAGCAGACAGAGTCAAGAGGGGCAACTACTGGCTGA 1227 0.4246 MYPQQQHHVPYTNIQQPYYSANPFLLSFPFPSDSALHPPGIIDPLGNSTPSAAYGAQTTDSQNWIVKQADPIRYDLAVGSSHETLAASANLLSTWNDTWSHQYFTNNIAGMLPNQTKDTKPMRCEVCKIDCNSKDVYDKHIIGKKHQRNLQEQINSTNTLLAGPSHVSVQSYTSSVQAQVLTGAVGKDLESKKRKLLNGGAPIDSVKVCTVCNIVCNSQEVFNKHLAGKKHAAQVGLMSNNGIGPYIAAFKRQGIGPWKKAPKKIKVAQSAWCEVCKINCNSRDVYIVHLSGKKHLKNLEKLSKPKIDAAAGAATTTANALQLAANPVIGPQEKPDSDKLKSQKEPEMDIETKKRKVVEGGAAAGAVRFCTLCNVVCNSETVFNAHLTGHKHGAMVKKQTESRGATTG 408
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi1890g00012 408 MobiDBLite consensus disorder prediction 328 350 - -
Gabi1890g00012 408 SUPERFAMILY beta-beta-alpha zinc fingers 97 152 IPR036236 -
Gabi1890g00012 408 SUPERFAMILY beta-beta-alpha zinc fingers 204 235 IPR036236 -
Gabi1890g00012 408 SUPERFAMILY beta-beta-alpha zinc fingers 268 302 IPR036236 -
Gabi1890g00012 408 SUPERFAMILY beta-beta-alpha zinc fingers 366 399 IPR036236 -
Gabi1890g00012 408 Gene3D Classic Zinc Finger 259 302 - -
Gabi1890g00012 408 Gene3D Classic Zinc Finger 111 153 - -
Gabi1890g00012 408 Gene3D Classic Zinc Finger 186 237 - -
Gabi1890g00012 408 Gene3D Classic Zinc Finger 337 400 - -
Gabi1890g00012 408 PANTHER ZINC FINGER PROTEIN 385B-LIKE 116 237 - -
Gabi1890g00012 408 SMART c2h2final6 271 295 IPR013087 -
Gabi1890g00012 408 SMART c2h2final6 368 390 IPR013087 -
Gabi1890g00012 408 SMART c2h2final6 122 146 IPR013087 -
Gabi1890g00012 408 SMART c2h2final6 207 231 IPR013087 -
Gabi1890g00012 408 Pfam Zinc-finger of C2H2 type 272 295 - -
Gabi1890g00012 408 Pfam Zinc-finger of C2H2 type 124 146 - -
Gabi1890g00012 408 Pfam Zinc-finger of C2H2 type 369 392 - -
Gabi1890g00012 408 Pfam Zinc-finger of C2H2 type 208 231 - -
Gabi1890g00012 408 MobiDBLite consensus disorder prediction 334 350 - -
Gabi1890g00012 408 SMART ZnF_U1_5 365 399 IPR003604 GO:0003676|GO:0008270
Gabi1890g00012 408 SMART ZnF_U1_5 119 153 IPR003604 GO:0003676|GO:0008270
Gabi1890g00012 408 SMART ZnF_U1_5 204 238 IPR003604 GO:0003676|GO:0008270
Gabi1890g00012 408 SMART ZnF_U1_5 268 302 IPR003604 GO:0003676|GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi1890g00012 Gabi-Chr1890 136996 141380 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1890g00012 189 396 C2H2 Transcription Factor Family AT5G61190 29.048 3.24e-20 91.3
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1890g00012 zf-met 2.1e-08 CL0361