Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1890g00003 ATGGAACTCACTGAAGAGCAAAGAAAACAAGTGGAAGCGAACCGTGCAGCAGCGATCGCAAAACGAAAAGCATTCTTAGAATCTCAACCTCAAACAGAAAGAGGAGAAGGAGGTCCCTGGCACCTTTTCAAATGCCAGAAGTTCTCGCACCACACCGAACCCAAACCCAAACCCGAACCACACAAGTTCCTCGCCAGGCTCGAAATATGCTCCCCCGATTCATTCTCCATCACCCCACTCCCTCTCCGCAATTTCCCCTTCCCTGGCGAACACAATTGCTTCGCCACCCTAAACGACACTCTCTCACACGTGATTCCTTCTCACTACACGCAGATCAGCGGTGGCGGACAGGCCTCCGTGTACAAGCTGGCCGATTACTGCGCCGTCGTGAAGCGGTTGAAATGCGTGGCGGCGGGGGAGATGATGCAGGTGGAGGAGATTCCGTGGGCGACGTTCAGTGTGGTGGAGAGGCTGTCGCATTCGTTCGTCGCCGGACGGTGGGAACCGGTGAGGCCGGAACACTTGAGTGAGGAGAAGGTTGATGAGTTGATTGAGAAGCTGCCAAAGACTCTGTTGGATGCGTTGCTGCCTTTCCAAATGGATGGATTGAAGTTTGCCTTGAGAAGAGGTGCTCGTTGTCTCATTGCTGATGATATGGGCCTTGGGAAAACACTCCAGGCTATTGCTATTGCGGGATGTTTCATGGATGAAGGTTCCATACTTGTTGTTTGCCCTGCTGTTTTGCGTTTTTCTTGGGCGGAAGAGTTGGAGCGTTGGCTTCCTTTTTGTTTGCCTGCTGATATCCATCTGGTCTTTGGCCGTCATGACAATCCTATATATTTAAAGAGATGCCCTAGGGTTGTGGTTATCTCTTATACCATGCTCCATCGTCTAAGGAAGAGCATGCTTGAGCATCAGTGGGCTCTCCTGATTGTTGATGAATCTCATCATGTACGATGTACAAAGAAAACCTCAGAACCAGGAGAGGTAAAGGCTGTCCTTGATGTGGCTTCGAAGGTCAAGCATATAATTCTGTTATCAGGGACACCTTCTTTGTCAAGACCGTATGACATATTTCATCAGATAAATATGTTATGGCCTGGTTTGCTTGGGAAGACTAAATACGAGTTTGCAAAAACTTATTGTGATTTCAAATATATGAAGGGCATCCAAGGAAAATATTTTGCGGATTATTCAAAGGGCATTCGCTTAGAGGAGTTGAACGTGTTATTAAAGCAAACTGTTATGATAAGGCGTATGAAGGAACATGTGTTGCTACAGTTACCTCCAAAACGCCGGCAAATTATAAATTTGCTGTTGAAGAGATCTGATATAGTTGCTGCCAAAACTGCAGTTGGTGTATTGAAGATTGATGCCTCTGAAAGTGAAAGTGATGACACGCCTTTGGAAAATTTGGATGAATCTGAAGGAAAGCTTTCTTATCAGGAACTTGGAGTTGCAAAGCTTTCTGGGTTTCGTGAATGGCTTTCCCTCCATCCACTCATTGCAGGATCAGAGAATGCTTCAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGAGTTTATATGCGAGAAAGGGATAAGTTTTATTCGAATCGATGGAAATACTCTTGCCAAAGACAGGCAATCAGCAGTAGTCTCATTTCGATCATCACCAGAGGTTAAAATTGCGATCATAGGTATTCTAGCAGCTGGTTTTGGACTTGATTTCTCGACAGCACAAGATGTTGTGTTCTTGGAGCTACCTCAGTGCCCTTCTCTGATGCTTCAGGCTGAGGATAGAGCTCACCGACGGGGGCAAACAAATGCAGTTAATGTATACATTTTCTGTGCAAAGGATACTTTGGATGAATCGCATTGGAAAAATTTGAACAAAAGTTTGCACCGTGTTTCATGTACAACAGATGGCAAATATGATGCAAAGAAAGAGATAGAGGTTGAAGGTGTTTCTTATTTAGACACATCTTTAAAAACTGATAGTTGTGAAGAGGAATCTGAATGCAAAGATGCATCAAGTGAAACACAATTGGATAAGCAACCTTCTGCAGTAAATTTGAATGAATCAGAAGCAAATGAAGATGATAATTCTGATGAGCTAACTTTTGTCAATAACTCAATTCATAGTGTTAATATTATGGTTGATAATGTTTCCTGTCGAGGTCTAGGCAAGGCTTTGATTTTGGATAGAAATCTTGATGTAGATGTTTTTGATGCTGAGGAGAGATGTTCTGAAAAGAGTTTCGAAGACAGAGATCAATTGCAGGATAAGAAATCAATTTCAACAACAGAAGCAGATGAGAAAGAGCCAGTTAATCCGGTTGAATCTGAGGAACATTGCTCTAACATTGATCTAGGCAAGGCTTTGGTTTTGGATGAAAATCTTGATGTTTATGTTTATGATGCCGAGAAGAGATGTTCTGAAAAGAATTTTAAAGTCAGAGATCAAGTAACAGAGTTGCAGGATAAGGAATCAATTTCAACAACAGAAGCAGATAAGAAAGAGCTTGTTCATCTGGTTGAAGCTGATGAACATTGCTCTAATCAAGTTGGTTCTCTGCGATTTGAGGTGAGCCCATACACTGGAAGGATCCACTTGTACACTTGCATTTTGGGTACAGATACAAGACCACAGCCACTTCATAAAAATTTCCGACCAGAGGAACTCGAGTTGCTGAGTTCTGTTGCTGATGATGAGAAAAGAAAGATAGAGTTTGTATCTATCAAGGACAACCCGGCTTATAGGCATGCTCTTCTGGATTTTGCAAATGAGTGGAAGAATTTGAGGTCAATTGAACGGAAGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTTGAGTTATGCTACTTGAATGAAAGCAATAATCACAACAACAGGGGATTATTAAATGGTGGAAGTAAACGACGGATGACACCTTTAACAGAGGTTAGCTATCCTTTACCATCAGATGCTGTCTGGAGAAAGGTTTATCTGCGAAGTGGCCTCGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGCCTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCATGGGTAACAATGCCAAGACACCTGAATTTTTTGAAGATCTTTTTTGTAATCTCATCTGCTTCGAAGAGTATCGCATGAGAACTAGCAACAGATTCCTCCGTCAGGAACTTTTCCAAATTGAACAAGGTGTGTGCACAAATTGCCAATTGAACTGTCATAAGCTTGTTGAGCATATAAGACCTTTGTCACTGGAAAGACGACGAGAGTACATTGAGAAAGTAGCACCAAAAGTTGCAAAGCGCAAGAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCATGGCATGCTGATCATATTGTTCCAGTATATCAAGGCGGAGGTGAATGCAAACTGGAGAATATGAGGACTCTGTGTGTAGCCTGCCATTATGATGTTACTGCTGCACAGAGTTCTGAACGACGCATAGCAAGAGCAAATGCCAGGAAACAACTGAAATTATTAATGAATAGCATGAAAAATGATCTGAAGGATGCTCTTGGCTCTAAGGACCATAGGCTTCTCGAGGTACGAGGTAGTAGTATACTTGAGGATGAGCTTTTAGTCAAGGTTCCTGGAAGTGCATATTCAGTAACTAACAGCTAA 3678 0.4269 MELTEEQRKQVEANRAAAIAKRKAFLESQPQTERGEGGPWHLFKCQKFSHHTEPKPKPEPHKFLARLEICSPDSFSITPLPLRNFPFPGEHNCFATLNDTLSHVIPSHYTQISGGGQASVYKLADYCAVVKRLKCVAAGEMMQVEEIPWATFSVVERLSHSFVAGRWEPVRPEHLSEEKVDELIEKLPKTLLDALLPFQMDGLKFALRRGARCLIADDMGLGKTLQAIAIAGCFMDEGSILVVCPAVLRFSWAEELERWLPFCLPADIHLVFGRHDNPIYLKRCPRVVVISYTMLHRLRKSMLEHQWALLIVDESHHVRCTKKTSEPGEVKAVLDVASKVKHIILLSGTPSLSRPYDIFHQINMLWPGLLGKTKYEFAKTYCDFKYMKGIQGKYFADYSKGIRLEELNVLLKQTVMIRRMKEHVLLQLPPKRRQIINLLLKRSDIVAAKTAVGVLKIDASESESDDTPLENLDESEGKLSYQELGVAKLSGFREWLSLHPLIAGSENASKMIIFAHHHKVLDGVQEFICEKGISFIRIDGNTLAKDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPSLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLHRVSCTTDGKYDAKKEIEVEGVSYLDTSLKTDSCEEESECKDASSETQLDKQPSAVNLNESEANEDDNSDELTFVNNSIHSVNIMVDNVSCRGLGKALILDRNLDVDVFDAEERCSEKSFEDRDQLQDKKSISTTEADEKEPVNPVESEEHCSNIDLGKALVLDENLDVYVYDAEKRCSEKNFKVRDQVTELQDKESISTTEADKKELVHLVEADEHCSNQVGSLRFEVSPYTGRIHLYTCILGTDTRPQPLHKNFRPEELELLSSVADDEKRKIEFVSIKDNPAYRHALLDFANEWKNLRSIERKKLLGKPLQLPLAVELCYLNESNNHNNRGLLNGGSKRRMTPLTEVSYPLPSDAVWRKVYLRSGLGKKEKEYTQGWSLTDEPLCKLCQKQCMGNNAKTPEFFEDLFCNLICFEEYRMRTSNRFLRQELFQIEQGVCTNCQLNCHKLVEHIRPLSLERRREYIEKVAPKVAKRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECKLENMRTLCVACHYDVTAAQSSERRIARANARKQLKLLMNSMKNDLKDALGSKDHRLLEVRGSSILEDELLVKVPGSAYSVTNS 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1890g00003 1225 Pfam HNH endonuclease 1124 1155 IPR002711 GO:0003676|GO:0004519|GO:0008270
Gabi1890g00003 1225 FunFam SNF2 DNA repair protein, putative 169 418 - -
Gabi1890g00003 1225 Pfam SNF2-related domain 211 445 IPR000330 GO:0005524|GO:0140658
Gabi1890g00003 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 419 IPR027417 -
Gabi1890g00003 1225 Coils Coil 1 21 - -
Gabi1890g00003 1225 SMART ultradead3 191 387 IPR014001 -
Gabi1890g00003 1225 Pfam Helicase conserved C-terminal domain 503 605 IPR001650 -
Gabi1890g00003 1225 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1175 - -
Gabi1890g00003 1225 Gene3D - 170 443 IPR038718 -
Gabi1890g00003 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 656 IPR027417 -
Gabi1890g00003 1225 Gene3D - 494 699 IPR027417 -
Gabi1890g00003 1225 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 368 IPR014001 -
Gabi1890g00003 1225 Gene3D - 1050 1184 - -
Gabi1890g00003 1225 MobiDBLite consensus disorder prediction 753 783 - -
Gabi1890g00003 1225 CDD SF2_C_SNF 487 616 - -
Gabi1890g00003 1225 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 497 651 IPR001650 -
Gabi1890g00003 1225 SMART helicmild6 522 605 IPR001650 -
Gabi1890g00003 1225 MobiDBLite consensus disorder prediction 753 780 - -
Gabi1890g00003 1225 CDD HNHc 1118 1158 IPR003615 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1890g00003 Gabi-Chr1890 28060 62569 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1890g00003 510 623 RAD5 or RAD16-like Gene Family AT1G11100 37.719 5.87e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1890g00003 SNF2_N 1.8e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1890g00003 K25861 - mtr:120579634 1557.73