Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1890g00002 ATGGAACTCACTGAAGAGCAAAGAAAACAAGTGGAAGCGAACCGTGCAGCAGCGATCGCAAAACGAAAAGCATTCTTAGAATCTCAACCTCAAACAGAAAGAGGAGAAGGAGGTCCCTGGCACCTTTTCAAATGCCAGAAGTTCTCGCACCACACCGAACCCAAACCCAAACCCGAACCACACAAGTTCCTCGCCAGGCTCGAAATATGCTCCCCCGATTCATTCTCCATCACCCCACTCCCTCTCCGCAATTTCCCCTTCCCTGGCGAACACAATTGCTTCGCCACCCTAAACGACACTCTCTCACACGTGATTCCTTCTCACTACACGCAGATCAGCGGTGGCGGACAGGCCTCCGTGTACAAGCTGGCCGATTACTGCGCCGTCGTGAAGCGGTTGAAATGCGTGGCGGCGGGGGAGATGATGCAGGTGGAGGAGATTCCGTGGGCGACGTTCAGTGTGGTGGAGAGGCTGTCGCATTCGTTCGTCGCCGGACGGTGGGAACCGGTGAGGCCGGAACACTTGAGTGAGGAGAAGGTTGATGAGTTGATTGAGAAGCTGCCAAAGACTCTGTTGGATGCGTTGCTGCCTTTCCAAATGGATGGATTGAAGTTTGCCTTGAGAAGAGGTGCTCGTTGTCTCATTGCTGATGATATGGGCCTTGGGAAAACACTCCAGGCTATTGCTATTGCGGGATGTTTCATGGATGAAGGTTCCATACTTGTTGTTTGCCCTGCTGTTTTGCGTTTTTCTTGGGCGGAAGAGTTGGAGCGTTGGCTTCCTTTTTGTTTGCCTGCTGATATCCATCTGGTCTTTGGCCGTCATGACAATCCTATATATTTAAAGAGATGCCCTAGGGTTGTGGTTATCTCTTATACCATGCTCCATCGTCTAAGGAAGAGCATGCTTGAGCATCAGTGGGCTCTCCTGATTGTTGATGAATCTCATCATGTACGATGTACAAAGAAAACCTCAGAACCAGGAGAGGTAAAGGCTGTCCTTGATGTGGCTTCGAAGGTCAAGCATATAATTCTGTTATCAGGGACACCTTCTTTGTCAAGACCGTATGACATATTTCATCAGATAAATATGTTATGGCCTGGTTTGCTTGGGAAGACTAAATACGAGTTTGCAAAAACTTATTGTGATTTCAAATATATGAAGGGCATCCAAGGAAAATATTTTGCGGATTATTCAAAGGGCATTCGCTTAGAGGAGTTGAACGTGTTATTAAAGCAAACTGTTATGATAAGGCGTATGAAGGAACATGTGTTGCTACAGTTACCTCCAAAACGCCGGCAAATTATAAATTTGCTGTTGAAGAGATCTGATATAGTTGCTGCCAAAACTGCAGTTGGTGTATTGAAGATTGATGCCTCTGAAAGTGAAAGTGATGACACGCCTTTGGAAAATTTGGATGAATCTGAAGGAAAGCTTTCTTATCAGGAACTTGGAGTTGCAAAGCTTTCTGGGTTTCGTGAATGGCTTTCCCTCCATCCACTCATTGCAGGATCAGAGAATGCTTCAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGAGTTTATATGCGAGAAAGGGATAAGTTTTATTCGAATCGATGGAAATACTCTTGCCAAAGACAGGCAATCAGCAGTAGTCTCATTTCGATCATCACCAGAGGTTAAAATTGCGATCATAGGTATTCTAGCAGCTGGTTTTGGACTTGATTTCTCGACAGCACAAGATGTTGTGTTCTTGGAGCTACCTCAGTGCCCTTCTCTGATGCTTCAGGCTGAGGATAGAGCTCACCGACGGGGGCAAACAAATGCAGTTAATGTATACATTTTCTGTGCAAAGGATACTTTGGATGAATCGCATTGGAAAAATTTGAACAAAAGTTTGCACCGTGTTTCATGTACAACAGATGGCAAATATGATGCAAAGAAAGAGATAGAGGTTCCTTTTGGGGATGTTGGGTGGCAGGTTGAAGGTGTTTCTTATTTAGACACATCTTTAAAAACTGATAGTTGTGAAGAGGAATCTGAATGCAAAGATGCATCAAGTGAAACACAATTGGATAAGCAACCTTCTGCAGTAAATTTGAATGAATCAGAAGCAAATGAAGATGATAATTCTGATGAGCTAACTTTTGTCAATAACTCAATTCATAGTGTTAATATTATGGTTGATAATGTTTCCTGTCGAGGTCTAGGCAAGGCTTTGATTTTGGATAGAAATCTTGATGTAGATGTTTTTGATGCTGAGGAGAGATGTTCTGAAAAGAGTTTCGAAGACAGAGATCAATTGCAGGATAAGAAATCAATTTCAACAACAGAAGCAGATGAGAAAGAGCCAGTTAATCCGGTTGAATCTGAGGAACATTGCTCTAACATTGATCTAGGCAAGGCTTTGGTTTTGGATGAAAATCTTGATGTTTATGTTTATGATGCCGAGAAGAGATGTTCTGAAAAGAATTTTAAAGTCAGAGATCAAGTAACAGAGGATAAGGAATCAATTTCAACAACAGAAGCAGATAAGAAAGAGCTTGTTCATCTGGTTGAAGCTGATGAACATTGCTCTAATCAAGTTGGTTCTCTGCGATTTGAGGTGAGCCCATACACTGGAAGGATCCACTTGTACACTTGCATTTTGGGTACAGATACAAGACCACAGCCACTTCATAAAAATTTCCGACCAGAGGAACTCGAGTTGCTGAGTTCTGTTGCTGATGATGAGAAAAGAAAGATAGAGTTTGTATCTATCAAGGACAACCCGGCTTATAGGCATGCTCTTCTGGATTTTGCAAATGAGTGGAAGAATTTGAGGTCAATTGAACGGAAGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTTGAGTTATGCTACTTGAATGAAAGCAATAATCACAACAACAGGGGATTATTAAATGGTGGAAGTAAACGACGGATGACACCTTTAACAGAGGTTAGCTATCCTTTACCATCAGATGCTGTCTGGAGAAAGGTTTATCTGCGAAGTGGCCTCGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGCCTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCATGGGTAACAATGCCAAGACACCTGAATTTTTTGAAGATCTTTTTTGTAATCTCATCTGCTTCGAAGAGTATCGCATGAGAACTAGCAACAGATTCCTCCGTCAGGAACTTTTCCAAATTGAACAAGGTGTGTGCACAAATTGCCAATTGAACTGTCATAAGCTTGTTGAGCATATAAGACCTTTGTCACTGGAAAGACGACGAGAGTACATTGAGAAAGTAGCACCAAAAGTTGCAAAGCGCAAGAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCATGGCATGCTGATCATATTGTTCCAGTATATCAAGGCGGAGGTGAATGCAAACTGGAGAATATGAGGACTCTGTGTGTAGCCTGCCATTATGATGTTACTGCTGCACAGAGTTCTGAACGACGCATAGCAAGAGCAAATGCCAGGAAACAACTGAAATTATTAATGAATAGCATGAAAAATGATCTGAAGGATGCTCTTGGCTCTAAGGACCATAGGCTTCTCGAGGTACGAGGTAGTAGTATACTTGAGGATGAGCTTTTAGTCAAGGTTCCTGGAAGTGCATATTCAGTAACTAACAGCTAA 3699 0.4277 MELTEEQRKQVEANRAAAIAKRKAFLESQPQTERGEGGPWHLFKCQKFSHHTEPKPKPEPHKFLARLEICSPDSFSITPLPLRNFPFPGEHNCFATLNDTLSHVIPSHYTQISGGGQASVYKLADYCAVVKRLKCVAAGEMMQVEEIPWATFSVVERLSHSFVAGRWEPVRPEHLSEEKVDELIEKLPKTLLDALLPFQMDGLKFALRRGARCLIADDMGLGKTLQAIAIAGCFMDEGSILVVCPAVLRFSWAEELERWLPFCLPADIHLVFGRHDNPIYLKRCPRVVVISYTMLHRLRKSMLEHQWALLIVDESHHVRCTKKTSEPGEVKAVLDVASKVKHIILLSGTPSLSRPYDIFHQINMLWPGLLGKTKYEFAKTYCDFKYMKGIQGKYFADYSKGIRLEELNVLLKQTVMIRRMKEHVLLQLPPKRRQIINLLLKRSDIVAAKTAVGVLKIDASESESDDTPLENLDESEGKLSYQELGVAKLSGFREWLSLHPLIAGSENASKMIIFAHHHKVLDGVQEFICEKGISFIRIDGNTLAKDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPSLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLHRVSCTTDGKYDAKKEIEVPFGDVGWQVEGVSYLDTSLKTDSCEEESECKDASSETQLDKQPSAVNLNESEANEDDNSDELTFVNNSIHSVNIMVDNVSCRGLGKALILDRNLDVDVFDAEERCSEKSFEDRDQLQDKKSISTTEADEKEPVNPVESEEHCSNIDLGKALVLDENLDVYVYDAEKRCSEKNFKVRDQVTEDKESISTTEADKKELVHLVEADEHCSNQVGSLRFEVSPYTGRIHLYTCILGTDTRPQPLHKNFRPEELELLSSVADDEKRKIEFVSIKDNPAYRHALLDFANEWKNLRSIERKKLLGKPLQLPLAVELCYLNESNNHNNRGLLNGGSKRRMTPLTEVSYPLPSDAVWRKVYLRSGLGKKEKEYTQGWSLTDEPLCKLCQKQCMGNNAKTPEFFEDLFCNLICFEEYRMRTSNRFLRQELFQIEQGVCTNCQLNCHKLVEHIRPLSLERRREYIEKVAPKVAKRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECKLENMRTLCVACHYDVTAAQSSERRIARANARKQLKLLMNSMKNDLKDALGSKDHRLLEVRGSSILEDELLVKVPGSAYSVTNS 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1890g00002 1232 FunFam SNF2 DNA repair protein, putative 169 418 - -
Gabi1890g00002 1232 Pfam SNF2-related domain 211 445 IPR000330 GO:0005524|GO:0140658
Gabi1890g00002 1232 Pfam Helicase conserved C-terminal domain 503 605 IPR001650 -
Gabi1890g00002 1232 MobiDBLite consensus disorder prediction 762 789 - -
Gabi1890g00002 1232 Coils Coil 1 21 - -
Gabi1890g00002 1232 CDD HNHc 1125 1165 IPR003615 -
Gabi1890g00002 1232 SMART ultradead3 191 387 IPR014001 -
Gabi1890g00002 1232 Gene3D - 1057 1191 - -
Gabi1890g00002 1232 MobiDBLite consensus disorder prediction 678 697 - -
Gabi1890g00002 1232 Pfam HNH endonuclease 1131 1162 IPR002711 GO:0003676|GO:0004519|GO:0008270
Gabi1890g00002 1232 Gene3D - 494 720 IPR027417 -
Gabi1890g00002 1232 Gene3D - 170 443 IPR038718 -
Gabi1890g00002 1232 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 368 IPR014001 -
Gabi1890g00002 1232 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1182 - -
Gabi1890g00002 1232 CDD SF2_C_SNF 487 616 - -
Gabi1890g00002 1232 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 497 651 IPR001650 -
Gabi1890g00002 1232 SMART helicmild6 522 605 IPR001650 -
Gabi1890g00002 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 419 IPR027417 -
Gabi1890g00002 1232 MobiDBLite consensus disorder prediction 762 792 - -
Gabi1890g00002 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 649 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1890g00002 Gabi-Chr1890 28060 62569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1890g00002 510 623 RAD5 or RAD16-like Gene Family AT1G11100 37.719 6.33e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi1890g00002 SNF2_N 1.8e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1890g00002 K25861 - mtr:120579634 1552.73