Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi188g00011 ATGGAGAGGTACACGCTACCCGTACAACCAAGAACTCACTCTAACATCGTTCCTTGGTTGGAACCCCAAGTTGAAGAAGCTAAACACCACGACAAGGAAGAAGAGATAGAATTAGCCATTGCCATGGATGCTCCTCTCACTTACTTCAAATCCATCATGGAACCCGAACCTATACCCCAACCCGTACCCGAACCTGAACCTGGTTGCTACATCAACTCTGCTATTAGTAGTAGCACTAATATTCCCTTTGTTTCAACAAATCCAACATCTGATAACTTTCTCATTCACCAACACAACATCAACATGGACTCATTCTCTCTCAACCCACACTCTTTCTTCAACAACAACAACAACAACAACAACAACCCTTTTGATACTGGCTTCGATTTGGGTCCAGAAAGTGGGTTTTTCCTTGGGAACCATTCCTCCAATTCCCATTTTTTGATGGGTTTTCCTCAGACTCAGATGGGTACCCTTGAACCCGAGTTTCACACGGGTATGGAACTCGAACCCTTTGGTGGTTCCGGTTCTGGTTCTGGTTCTGGTTCTGGGAATGCTATGTTTTTGAACAAGGCTAAGGCTTTAAGGCCTCTTGAGGTGGCGCAATCCACGCTCTTTCAGAAGCGTGCGGCGAAGAGGAGGAGAGGGGAAGAATTGGAAGTTGAGGAAGGCAGTGTTGATGTTGATGCTTATGATTCTGATGATGTTAATGATAATGGGAATAATGGGAACCCAGATGATGGCACTGTTAATGTTGGTGGAGACCAGAAGGGGAAGAAGAAAGGGCTTCCTGCGAAAAATCTTATGGCTGAGAGGCGGCGTAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAGTTGACTATTTGAAGGAGCTTCTGCAGAGGATTAATGATCTTCATAATGAACTGGAGTCAACTCCACCTGGCTCATTGGTGACACCTTCTACAAGCTTTTACCCTTTGACACCCACTCCACCAACCCTTCCCTGCCGGGTCAAGGAGGAACTATATCCTGGTGCCTTGCCAAGCCCTAAAAACCAAAATGCAAAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGTACTCGCAGACCAGGTCTTTTGCTTTCCACCATGAGGGCTTTGGATAACCTCGGATTGGATGTTCAGCAGGCCGTTATTAGCTGTTTCAATGGCTTCGCTTTAGATGTTTTCAGAGCTGAGCAACGCATAGAAGGCCAGGATGTTCCCCCTGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCGGGCTTTCATGGTATGATGTGA 1362 0.4596 MERYTLPVQPRTHSNIVPWLEPQVEEAKHHDKEEEIELAIAMDAPLTYFKSIMEPEPIPQPVPEPEPGCYINSAISSSTNIPFVSTNPTSDNFLIHQHNINMDSFSLNPHSFFNNNNNNNNNPFDTGFDLGPESGFFLGNHSSNSHFLMGFPQTQMGTLEPEFHTGMELEPFGGSGSGSGSGSGNAMFLNKAKALRPLEVAQSTLFQKRAAKRRRGEELEVEEGSVDVDAYDSDDVNDNGNNGNPDDGTVNVGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINDLHNELESTPPGSLVTPSTSFYPLTPTPPTLPCRVKEELYPGALPSPKNQNAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQRIEGQDVPPEQIKAVLLDSAGFHGMM 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi188g00011 453 CDD ACT_UUR-ACR-like 382 442 - -
Gabi188g00011 453 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 129 449 - -
Gabi188g00011 453 SMART finulus 268 317 IPR011598 GO:0046983
Gabi188g00011 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 329 IPR036638 GO:0046983
Gabi188g00011 453 FunFam BHLH transcription factor 258 326 - -
Gabi188g00011 453 Pfam Helix-loop-helix DNA-binding domain 269 311 IPR011598 GO:0046983
Gabi188g00011 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 311 IPR011598 GO:0046983
Gabi188g00011 453 MobiDBLite consensus disorder prediction 208 263 - -
Gabi188g00011 453 CDD bHLH_AtAMS_like 265 329 - -
Gabi188g00011 453 Gene3D - 256 325 IPR036638 GO:0046983
Gabi188g00011 453 MobiDBLite consensus disorder prediction 235 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi188g00011 Gabi-Chr188 98414 103027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi188g00011 104 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 56.771 5.36e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi188g00011 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi188g00011 - - tcc:18601120 403.675