Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi188g00005 ATGTCCATCTTGCCCTCACAAACCCAAGCTGCATCATCATCCTCATCTTCTGCGCCATCTACAAACCCTAATCCCCAAAATGGAATTCGAAACGTTAACAATCCCCTTCCTTCATCACTCTCCTCTCTTTCCCCACAACTCAACATCGCTTTCGGATCTCTTCAGATCTCCGATAATCCAGGTTCATCGACTCCAGCTGCTGAAGATTCTGGTGGACCGTCCGAAAAGGTGACAGAATTAGGGTCTCCAAGTGGTATGAAGGCTACATCTCACCAAAACTCTAGAACACATTCTAGGAGTTACTCGGGAAGACAGACAATTGGATCATCCCAGTCAGTGGGAAATACAACAGGAACAGCTTCTTCTCATAGAAATCTACAGATTCCTGGGTCTGTAAATTCTCAAGGAAGCACCCCTTCAGCGGGAAGAAAATCTCAGGCAGTGAATGGCAATTACTTGCTGAATTTTCATTATGATCCAATATCCCGCTCTCAATCAAGGGGTGCTCCTCCTCCCCCTCCAGCAAGAAGGCAGCGGAAGAGAAAACCATACAACAAAGATTTGTTTTTGCAGGCAAATTACAAATTCGTGGTGTTAGATTCAGGAAATTATTCACCTGAGTCAATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTCAACCCCCTTTCCAGTTCAGTGTCCAATTTGTTTGGAAAATCCCGTGTGTCCACAAATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAATACTTATTACTGGGTGAAGAAGATCACAAAGGTGATTGCTGGAAAAGGTGTCCTTTATGCTTTGTGATGATATCTGCCAAGGATTTATATACAGTACACATCACTAATGTCAAACAGTATCAAGTAGGAGATAATGTTGAGTTCACCTTTTTAACGCGAAAAAAGGATTCATTTACTCTGTCACATAAAAATAAACAAGAAACAGATATCAGACCATGTGGCAATGGAGATTTATGTGATCCCTTTTCTAAGTTCACACTCACTTCAGATGTAGATCTCTCAGTGAGACATGCAATATCAGATCTAGATGGTTGGCTGGCCAGGGCTGATTCAGGTCTTGTTGATGACTTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAACAATTAAAACAGAGGAAGAAGTATTGGAATGAACACAGGGCTTGTGATGGAGAAAAATCTTCTAGGCTTATTGATTATGGACATCAGATACCATCAATAGGTGAAAATTCTATGGATATTGATGATGGAAACTGTTTGAATGGATCAAGAACTTCCTCTATGGGTTTCCATGACCAAAGTAAGGTTACAATAATGGATAATTCAATTGTTGGAGCTGTTCCGGATCAGACTTTGGATGTGGAGAAAGTATTAGAAGAGCAGGAAATGAATTTATCTTCTTCGTATGAGGAGAAAAAAGATATTCAAAGGCATTCAAGTGGCGTTGGAGATGTGAAGGAAAGTGATTCGTACAATTTCTACCAGGCCGCTGATGGTCAGCATCTAATTCTACATACTCTGAACATGAAGTGTTTACTTCACCATTATGGGGGCTATGATATGCTTCCCCACAGAATAAGTGGAAAGATTCTGCAATTGGAGACAGTTACTCAGTCTGAGGCTGTGAGGAGGCGGTATCGTTTCCTAAGTCATTTTCCGTTGACCACAACATTTCAGCTTTGTGAAATTGATTTGGGTGAGATGTTGCCACCTGAAGCACTGGCCCCATTTATGGATGAAATAAAGAAGCGTGCAAATCAGAGGAAGCAAATAGCAAAGAAGGAACGGAAGGAAAAAATAAAGGCTGAAGCTACTTCTACTTATTCTCTTCCAATACCAACAAGTTATCAACTTACTTCTCGTGATGATCCTCCCACTTTCTCCATGGATGACTTTGAAGCTCTGGGAAATTCAGCTATGTCATCAAGTCCTCCAGTGGTGGGGGAGAGAAAATTGTTCTCAAATGTTACGAGGCTTGGTTTTGCTGCTGGTCATGATTCTCCATCCTTACAAATTCAAGAAAGTAGCAATACAACCACTGATTCTTCTGGAACAACAGGTTTGAGAAATGGGGAGACATCGTCATATTCCAATGTTATATCAAGAACAGAATCTAATATAAGCTTGAATGCACCAAAGACAAATGACTTGGGGAAGAAGGGAAAGAAACAAAATCGAGTTCTGCTGTCAACAGCTGGTGGCAGGCGTTATTGA 2253 0.4101 MSILPSQTQAASSSSSSAPSTNPNPQNGIRNVNNPLPSSLSSLSPQLNIAFGSLQISDNPGSSTPAAEDSGGPSEKVTELGSPSGMKATSHQNSRTHSRSYSGRQTIGSSQSVGNTTGTASSHRNLQIPGSVNSQGSTPSAGRKSQAVNGNYLLNFHYDPISRSQSRGAPPPPPARRQRKRKPYNKDLFLQANYKFVVLDSGNYSPESMDPDKMLQWEDIICVTYSTPFPVQCPICLENPVCPQITSCGHIFCFPCILQYLLLGEEDHKGDCWKRCPLCFVMISAKDLYTVHITNVKQYQVGDNVEFTFLTRKKDSFTLSHKNKQETDIRPCGNGDLCDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLKQRKKYWNEHRACDGEKSSRLIDYGHQIPSIGENSMDIDDGNCLNGSRTSSMGFHDQSKVTIMDNSIVGAVPDQTLDVEKVLEEQEMNLSSSYEEKKDIQRHSSGVGDVKESDSYNFYQAADGQHLILHTLNMKCLLHHYGGYDMLPHRISGKILQLETVTQSEAVRRRYRFLSHFPLTTTFQLCEIDLGEMLPPEALAPFMDEIKKRANQRKQIAKKERKEKIKAEATSTYSLPIPTSYQLTSRDDPPTFSMDDFEALGNSAMSSSPPVVGERKLFSNVTRLGFAAGHDSPSLQIQESSNTTTDSSGTTGLRNGETSSYSNVISRTESNISLNAPKTNDLGKKGKKQNRVLLSTAGGRRY 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi188g00005 750 MobiDBLite consensus disorder prediction 1 69 - -
Gabi188g00005 750 Pfam Zinc finger, C3HC4 type (RING finger) 233 279 IPR018957 GO:0046872
Gabi188g00005 750 ProSitePatterns Zinc finger RING-type signature. 248 257 IPR017907 -
Gabi188g00005 750 MobiDBLite consensus disorder prediction 1 145 - -
Gabi188g00005 750 MobiDBLite consensus disorder prediction 83 145 - -
Gabi188g00005 750 CDD RING-HC_RNF10 231 288 - -
Gabi188g00005 750 SMART ring_2 233 279 IPR001841 -
Gabi188g00005 750 MobiDBLite consensus disorder prediction 681 726 - -
Gabi188g00005 750 PANTHER RING FINGER 10 FAMILY MEMBER 64 750 IPR039739 -
Gabi188g00005 750 SUPERFAMILY RING/U-box 232 286 - -
Gabi188g00005 750 MobiDBLite consensus disorder prediction 678 750 - -
Gabi188g00005 750 FunFam RING finger protein 10 226 294 - -
Gabi188g00005 750 MobiDBLite consensus disorder prediction 160 182 - -
Gabi188g00005 750 ProSiteProfiles Zinc finger RING-type profile. 233 279 IPR001841 -
Gabi188g00005 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 313 IPR013083 -
Gabi188g00005 750 Coils Coil 595 615 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi188g00005 142 700 C3H Transcription Factor Family AT3G26730 57.241 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi188g00005 K26979 - gmx:100798764 1136.32