Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1888g00009 ATGTTCCCTGATACATTTACTATGATTGCAACAATAATTATTGTTGTTGCACTAACACTTGTAGGTGTTAGTTCAGTTCCAGAAGCTGATAAGATAAACAGCTTACCAGGGCAGCCACCGGTCAAATATGAGCAATATTCTGGTTATATTGCAGTGGATGATCAGCATCAGAGAGCATTGTTTTACTATTTTGTTGAAGCAGAAGAAGACCCTGCTTCTAAGCCACTAGTACTCTGGTTGAATGGAGGGCCTGGTTGTTCGTCTTTTGGAGTTGGAGCTTTTGCAGAGCATGGCCCTTTCAAACCGGGTGACAACAATGTTCTTTTGAAAAATGATTATAGCTGGAACAAAGTGGCAAATATGCTATACTTGGAATCACCAGCTGGTGTTGGATTCTCCTACTCTTCCAATACATCTTTCTATGTCTTAGTGACTGATGAAATTACAGCTAGGGACAATCTTGTTTTCCTACAGCGCTGGTTCACTGAATTCCCAGAGTACTCAAATAACGACTTCTTCATTACAGGAGAGAGCTATGCAGGCCACTATGTTCCACAACTTGCACAACTTATTGTTGAAACCAAGACCAAGTTCAATCTCAAGGGGATAGCTATAGGAAATCCTCTTCTGGAATTCAATACTGATTTCAACTCCAATGCTGATTTCTTTTGGTCCCACGGACTCATAGCAGATGAAACTTACGAAGTATTCACTAGAGCCTGTAACTATTCCACAATATTTAGGACACAAATTCTAAATGAGAATCTTACTGGTGTTTGTGCAAGAGTAAATAACACTGTTTTTACTGAAGTTAGCAATTATATAGATCCATATGATGTCACTCTTGATGTCTGTTTGTCGTCAATCAATCAACAGGCTTATAGGCTGAAACAACTGCAAGAGACACAGAAAATAGATGTTTGTGTGGAAGATAAAACATTCGCATACTTAAACAGGAAAGAAGTGCAGGAAGCTCTCCATGCTAAGCTCATTGGAGTCAAGGAATGGTCAACTTGCAGTGAAGTTCTCCATTATGACTATGAGAATCTAGAGATACCAACAATTCCTATTCTAGGGTCACTTGTTAAGTATGGCATCCCGGTTCTAGTATACAGTGGAGATCAAGATTCAATCATCCCATTATTGGGATCACGATCACTAGTGAACGGATTAGCCAAGGAACTTGGACTGAATACAACAGTGGCTTATAGAACCTGGTTTCAAGGAAAACAGGTAGCAGGATGGACACAGGTATATGGAGACATATTATCATATGCAACCATAAGAGGAGCATCTCATGAAGCTCCCTTTTCTCAACCAGAGAGATCATTTGTCCTATTTAAAGTATTTCTGGAAGGAAAGCCACTACCAACTATTATCTAA 1383 0.3955 MFPDTFTMIATIIIVVALTLVGVSSVPEADKINSLPGQPPVKYEQYSGYIAVDDQHQRALFYYFVEAEEDPASKPLVLWLNGGPGCSSFGVGAFAEHGPFKPGDNNVLLKNDYSWNKVANMLYLESPAGVGFSYSSNTSFYVLVTDEITARDNLVFLQRWFTEFPEYSNNDFFITGESYAGHYVPQLAQLIVETKTKFNLKGIAIGNPLLEFNTDFNSNADFFWSHGLIADETYEVFTRACNYSTIFRTQILNENLTGVCARVNNTVFTEVSNYIDPYDVTLDVCLSSINQQAYRLKQLQETQKIDVCVEDKTFAYLNRKEVQEALHAKLIGVKEWSTCSEVLHYDYENLEIPTIPILGSLVKYGIPVLVYSGDQDSIIPLLGSRSLVNGLAKELGLNTTVAYRTWFQGKQVAGWTQVYGDILSYATIRGASHEAPFSQPERSFVLFKVFLEGKPLPTII 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1888g00009 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 423 440 IPR033124 GO:0004185
Gabi1888g00009 460 FunFam Carboxypeptidase 25 457 - -
Gabi1888g00009 460 Pfam Serine carboxypeptidase 37 452 IPR001563 GO:0004185|GO:0006508
Gabi1888g00009 460 Gene3D - 354 453 - -
Gabi1888g00009 460 Gene3D - 308 344 - -
Gabi1888g00009 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Gabi1888g00009 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Gabi1888g00009 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Gabi1888g00009 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
Gabi1888g00009 460 Gene3D alpha/beta hydrolase 26 287 IPR029058 -
Gabi1888g00009 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 440 IPR001563 GO:0004185|GO:0006508
Gabi1888g00009 460 SUPERFAMILY alpha/beta-Hydrolases 33 457 IPR029058 -
Gabi1888g00009 460 FunFam Carboxypeptidase 354 453 - -
Gabi1888g00009 460 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1888g00009 Gabi-Chr1888 207302 210648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1888g00009 316 456 Calmodulin-binding Proteins AT2G22960 31.206 8.31e-19 82.4