Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1888g00007 ATGACTGCAACAATAATTATTGTTGTTGCACTAACACTTGTAGGTGTTAGTTCAGTTCCAGAAGCTGATAAGATAAGCAGCTTACCAGGGCAGCCACCGGTGAAATATGAGCAATATTCTGGTTATATTGCAGTGGATGATCAGCATCAGAGAGCATTGTTTTACTATTTTGTTGAAGCAGAAGAAGACCCTGCTTCTAAGCCACTAGTACTCTGGTTGAATGGAGGGCCTGGTTGTTCGTCTTTTGGAGTTGGAGCTTTTGAAGAGCATGGCCCTTTCAAACCGGGTGACAACAATGTTCTTTTGAAAAATGATTATAGCTGGAACAAAGAGGCAAATATGCTATACTTGGAATCACCAGCAGGTGTTGGATTCTCCTACTCTTCCAATACATCTTTCTATGACTTAGTGACTGATGAAATTACAGCTAGAGACAATCTTGTTTTCCTACAGCGCTGGTTCACTGAATTCCCACAGTACTCAAATAACGATTTCTTTATTACAGGAGAGAGCTACGCAGGTCACTATGTTCCACAACTTGCACAACTTATTGTTGACACCAAGACCAAGTTCAATCTCAAGGGGATAGCTATAGGAAATCCTGTTCTGGAATTCAATACTGATCTCAACTCCTATGCTGAGTTCTTTTGGTCCCACGGACTGATAGCAGATGAAACTTACGAATTATTCACTAGAGCCTGCAACTATTCCACAATATATAGGACAACGCAAATTCTAAATGAGACTCTTAGTGGAGTTTGTGCAAGAGTAAATAACACTGTTTTTACTGAAATTGGCAATTATATAGATCCATATGATGTCACTCTTGATGTCTGTTTGTCATCAATCCATCAACAGGCTTATAGGCTGAAAAAACTGCAAGAGGCACAGAAGATAGATGTTTGTGTGGAAGATAAAACATTAGCATACTTAAACAGGAAAGAAGTGCAGGAAGCTCTCCATGCTAAGCTCATTGGCGTAAAGGAATGGTCAACTTGCAGTGAAGTTCTCCAGTATGACAACAAGAATCTAGAGATACCAACAATTCCTATTCTAGGGTCACTTGTTAAGTATGGCATCCCGGTTCTAGTATACAGTGGAGATCAAGATTCAGTCATCCCATTATTGGGATCACGATCACTAGTGAACGGATTAGCCAAGGAACTTGGACTGAATACAACAGTGGCTTATAGAACCTGGTTTCAAGGAAAACAGGTAGCAGGATGGACACAGGTATATGGAGACATATTATCATATGCAACCATAAGAGGAGCATCTCATAAAGCGCCCTTTTCTCAACCAGAGAGATCACTTGTCCTATTTAAAGCATTTCTGGAAGGAAAGCCACTACCAACTATTATCTAA 1365 0.4015 MTATIIIVVALTLVGVSSVPEADKISSLPGQPPVKYEQYSGYIAVDDQHQRALFYYFVEAEEDPASKPLVLWLNGGPGCSSFGVGAFEEHGPFKPGDNNVLLKNDYSWNKEANMLYLESPAGVGFSYSSNTSFYDLVTDEITARDNLVFLQRWFTEFPQYSNNDFFITGESYAGHYVPQLAQLIVDTKTKFNLKGIAIGNPVLEFNTDLNSYAEFFWSHGLIADETYELFTRACNYSTIYRTTQILNETLSGVCARVNNTVFTEIGNYIDPYDVTLDVCLSSIHQQAYRLKKLQEAQKIDVCVEDKTLAYLNRKEVQEALHAKLIGVKEWSTCSEVLQYDNKNLEIPTIPILGSLVKYGIPVLVYSGDQDSVIPLLGSRSLVNGLAKELGLNTTVAYRTWFQGKQVAGWTQVYGDILSYATIRGASHKAPFSQPERSLVLFKAFLEGKPLPTII 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1888g00007 454 Gene3D alpha/beta hydrolase 19 280 IPR029058 -
Gabi1888g00007 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 178 IPR001563 GO:0004185|GO:0006508
Gabi1888g00007 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 104 116 IPR001563 GO:0004185|GO:0006508
Gabi1888g00007 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 417 430 IPR001563 GO:0004185|GO:0006508
Gabi1888g00007 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 127 IPR001563 GO:0004185|GO:0006508
Gabi1888g00007 454 FunFam Carboxypeptidase 348 447 - -
Gabi1888g00007 454 ProSitePatterns Serine carboxypeptidases, serine active site. 167 174 IPR018202 GO:0004185
Gabi1888g00007 454 Gene3D - 302 338 - -
Gabi1888g00007 454 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 24 434 IPR001563 GO:0004185|GO:0006508
Gabi1888g00007 454 FunFam Carboxypeptidase 18 451 - -
Gabi1888g00007 454 Pfam Serine carboxypeptidase 30 447 IPR001563 GO:0004185|GO:0006508
Gabi1888g00007 454 ProSitePatterns Serine carboxypeptidases, histidine active site. 417 434 IPR033124 GO:0004185
Gabi1888g00007 454 Gene3D - 348 447 - -
Gabi1888g00007 454 SUPERFAMILY alpha/beta-Hydrolases 26 451 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1888g00007 Gabi-Chr1888 186707 189373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1888g00007 310 450 Calmodulin-binding Proteins AT2G22960 29.787 7.92e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1888g00007 K16297 - gmx:100799900 740.339