Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1888g00006 ATGACTGCAACAATAATTATTGTTGTTGCACTAACACTTGTAGGTGTTAGTTCAGTTCCAGAAGCTGATAAGATAAGCAGCTTACCAGGGCAGCCACCGGTGAAATATGAGCAATATTCTGGTTATATTGCAGTGGATGATCAGCATCAGAGAGCATTGTTTTACTATTTTGTTGAAGCAGAAGAAGACCCTGCTTCTAAGCCACTAGTACTCTGGTTGAATGGAGGGCCTGGTTGTTCGTCTTTTGGAGTTGGAGCTTTTGAAGAGCATGGCCCTTTCAAACCGGGTGACAACAATGTTCTTTTGAAAAATGATTATAGCTGGAACAAAGAGGCAAATATGCTATACTTGGAATCACCAGCAGGTGTTGGATTCTCCTACTCTTCCAATACATCTTTCTATGACTTAGTGACTGATGAAATTACAGCTAGAGACAATCTTGTTTTCCTACAGCGCTGGTTCACTGAATTCCCACAGTACTCAAATAACGATTTCTTTATTACAGGAGAGAGCTACGCAGGTCACTATGTTCCACAACTTGCACAACTTATTGTTGACACCAAGACCAAGTTCAATCTCAAGGGGATAGCTATAGGAAATCCTGTTCTGGAATTCAATACTGATCTCAACTCCTATGCTGAGTTCTTTTGGTCCCACGGACTGATAGCAGATGAAACTTACGAATTATTCACTAGAGCCTGCAACTATTCCACAATATATAGGACAACGCAAATTCTAAATGAGACTCTTAGTGGAGTTTGTGCAAGAGTAAATAACACTGTTTTTACTGAAATTGGCAATTATATAGATCCATATGATGTCACTCTTGATGTCTGTTTGTCATCAATCCATCAACAGGCTTATAGGCTGAAAAAACTGGTGAGTTCCTCTGATCAGCAAGAGGCACAGAAGATAGATGTTTGTGTGGAAGATAAAACATTAGCATACTTAAACAGGAAAGAAGTGCAGGAAGCTCTCCATGCTAAGCTCATTGGCGTAAAGGAATGGTCAACTTGCAGTGAAGTTCTCCAGTATGACAACAAGAATCTAGAGATACCAACAATTCCTATTCTAGGGTCACTTGTTAAGTATGGCATCCCGGTTCTAGTATACAGTGGAGATCAAGATTCAGTCATCCCATTATTGGGATCACGATCACTAGTGAACGGATTAGCCAAGGAACTTGGACTGAATACAACAGTGGCTTATAGAACCTGGTTTCAAGGAAAACAGGTAGCAGGATGGACACAGGTATATGGAGACATATTATCATATGCAACCATAAGAGGAGCATCTCATAAAGCGCCCTTTTCTCAACCAGAGAGATCACTTGTCCTATTTAAAGCATTTCTGGAAGGAAAGCCACTACCAACTATTATCTAA 1383 0.4027 MTATIIIVVALTLVGVSSVPEADKISSLPGQPPVKYEQYSGYIAVDDQHQRALFYYFVEAEEDPASKPLVLWLNGGPGCSSFGVGAFEEHGPFKPGDNNVLLKNDYSWNKEANMLYLESPAGVGFSYSSNTSFYDLVTDEITARDNLVFLQRWFTEFPQYSNNDFFITGESYAGHYVPQLAQLIVDTKTKFNLKGIAIGNPVLEFNTDLNSYAEFFWSHGLIADETYELFTRACNYSTIYRTTQILNETLSGVCARVNNTVFTEIGNYIDPYDVTLDVCLSSIHQQAYRLKKLVSSSDQQEAQKIDVCVEDKTLAYLNRKEVQEALHAKLIGVKEWSTCSEVLQYDNKNLEIPTIPILGSLVKYGIPVLVYSGDQDSVIPLLGSRSLVNGLAKELGLNTTVAYRTWFQGKQVAGWTQVYGDILSYATIRGASHKAPFSQPERSLVLFKAFLEGKPLPTII 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1888g00006 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 24 440 IPR001563 GO:0004185|GO:0006508
Gabi1888g00006 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 423 440 IPR033124 GO:0004185
Gabi1888g00006 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 127 IPR001563 GO:0004185|GO:0006508
Gabi1888g00006 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 104 116 IPR001563 GO:0004185|GO:0006508
Gabi1888g00006 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 178 IPR001563 GO:0004185|GO:0006508
Gabi1888g00006 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
Gabi1888g00006 460 SUPERFAMILY alpha/beta-Hydrolases 26 457 IPR029058 -
Gabi1888g00006 460 Gene3D - 308 344 - -
Gabi1888g00006 460 FunFam Carboxypeptidase 18 457 - -
Gabi1888g00006 460 Pfam Serine carboxypeptidase 30 453 IPR001563 GO:0004185|GO:0006508
Gabi1888g00006 460 ProSitePatterns Serine carboxypeptidases, serine active site. 167 174 IPR018202 GO:0004185
Gabi1888g00006 460 Gene3D - 354 453 - -
Gabi1888g00006 460 Gene3D alpha/beta hydrolase 19 281 IPR029058 -
Gabi1888g00006 460 FunFam Carboxypeptidase 354 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1888g00006 Gabi-Chr1888 186707 189373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1888g00006 316 456 Calmodulin-binding Proteins AT2G22960 29.787 7.52e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1888g00006 K16297 - gmx:100799900 733.791