Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1888g00005 ATGCTCCCTAATACATTTACTATGATTGCAACAATAATTATTGTTGTTGCACTAACACTTGTAGGTGTGAGTTCAGTTCCAGAAGCTGATAAGATAAGCACTTTGCCAGGGCAGCCACCGGTCAAATTTGAGCAATATTCTGGTTACATAACCGTGGATGAGCAGCAGCAGAGAGCATTGTTTTACTACTTTGTTGAAGCAGAAGATGACCCTGCTTCCAAGCCACTAGTCCTTTGGTTGGAAGGAGGGCCTGGTTGTTCGTCTCTAATTGGAGCTTTTGTTGAGCATGGCCCTTTCAAACCGGGTGACAATCTTCTGGTGAAAAATGATTACAGCTGGAACAAAGAGGCAAATATGCTATACTTGGAATCACCAGCAGGTGTTGGATTCTCCTACTCTTCCAATACATCTTTCTATGACTTAGTGACTGATGAAATTACAGCTAGGGATAATCTTGTTTTCCTACAGCGCTGGTTCACTGAATTTCCACAGTACTCCAACAACGACTTTTTCATTTCAGGGTCGAGCTATGCAGGTCATTATGTTCCACAACTTGCACAACTTATTGTGGAAACCAAGACCAAATTCAATCTCAAGGGGATAGCAATGGGGAATCCACTTCTGGAATTCAATACTGATTTCAACTCCAAAGCTGAGTTCCTTTGGTCCCACGGACTCATAGCAGATGAAACTTACGAAGTCTTCACTAGAGCATGCAACTATTCCACAATATATAGGATTACGCAAATTCAAAATAGGAATCTTAGTGGAGTTTGTGCAAGAGTAAATAAGCTTGTTTTTACTGAGGTTAACAAATATACAGATACATATGATGTCACTCTTGATGTCTGTTTGTCATCAGTCGATCAACAGGCTTATGTACTGAATAATCTGCAAGGGACAGAGAAGATAGATGTTTGTGCGCAAGATAAAACAATGACATACTTAAACAGAAAAGAAGTGCAGAAAGCTCTCCATGCTAAGCTTGTTGGAGTCACCAAATGGTCAGCTTGCAGCGGAGTTGTCCATTATGACTATGAGAATTTTGAGATACCAACAATTCCTATTCTAGGGTCACTTGTTAAGTCTGGCATCCGGATTCTAGTATTCAGTGGAGATCAAGATTCAGTCATCCCATTACTGGGATCGCGATCACTAATAAACGGATTAGGCAAAGAACTTGGACTGAATACAACAGTGGCCTATAGAGCCTGGTTTGAGAGAAAACAGGTAGCAGGATGGACGCAGGTATATGGAGACATATTATCATATGCAACTATAAGAGGTGCATCTCATTTACCACCCTATACACAACCAGAGAGATCACTAGTGCTATTTAAGGCATTTCTGGAAGGAAAGTCACTACCAACAATTATCTAA 1380 0.4072 MLPNTFTMIATIIIVVALTLVGVSSVPEADKISTLPGQPPVKFEQYSGYITVDEQQQRALFYYFVEAEDDPASKPLVLWLEGGPGCSSLIGAFVEHGPFKPGDNLLVKNDYSWNKEANMLYLESPAGVGFSYSSNTSFYDLVTDEITARDNLVFLQRWFTEFPQYSNNDFFISGSSYAGHYVPQLAQLIVETKTKFNLKGIAMGNPLLEFNTDFNSKAEFLWSHGLIADETYEVFTRACNYSTIYRITQIQNRNLSGVCARVNKLVFTEVNKYTDTYDVTLDVCLSSVDQQAYVLNNLQGTEKIDVCAQDKTMTYLNRKEVQKALHAKLVGVTKWSACSGVVHYDYENFEIPTIPILGSLVKSGIRILVFSGDQDSVIPLLGSRSLINGLGKELGLNTTVAYRAWFERKQVAGWTQVYGDILSYATIRGASHLPPYTQPERSLVLFKAFLEGKSLPTII 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1888g00005 459 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 439 IPR001563 GO:0004185|GO:0006508
Gabi1888g00005 459 FunFam Carboxypeptidase 353 452 - -
Gabi1888g00005 459 SUPERFAMILY alpha/beta-Hydrolases 34 455 IPR029058 -
Gabi1888g00005 459 Gene3D alpha/beta hydrolase 26 285 IPR029058 -
Gabi1888g00005 459 Gene3D - 353 452 - -
Gabi1888g00005 459 FunFam Carboxypeptidase 25 456 - -
Gabi1888g00005 459 Gene3D - 307 343 - -
Gabi1888g00005 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Gabi1888g00005 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185|GO:0006508
Gabi1888g00005 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 422 435 IPR001563 GO:0004185|GO:0006508
Gabi1888g00005 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Gabi1888g00005 459 Pfam Serine carboxypeptidase 36 452 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1888g00005 Gabi-Chr1888 166732 169673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1888g00005 315 455 Calmodulin-binding Proteins AT2G22960 30.496 3.38e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1888g00005 K16297 - gmx:100799900 739.954