Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1888g00004 ATGATTGCAACAATAATTATTGTTGTTGCACTAACACTTGAAGGTGTGAGTTCAGTTCCAGAAGCTGATAAGATAAGCACTTTGCCGGGGCAGCCACCGGTCAAATTTGTGCAATATTCTGGTTACATAACCGTGGATGAGCAGCAGCAGAGAGCAATGTTTTACTACTTTGCTGAAGCAGAAGATGACCCTGCTTCCAAGCCATTAGTCCTTTGGTTGGCTGGAGGGCCTGCTTGTTCGTCTGTGGGACTTGGAGCTTTTGAAGAGCATGGCCCTTTCAAACCGGGTGACAACAATGTTCTTTTGAAAAATGATTACAGTTGGAACAAAGAGGCAAATATGCTATACTTAGAATCAACAGCTGGTGTTGGATTCTCCTACTCTACCAATACTTCTTTCTACGACTTAGTGAATGATGAAATTACAGCTAGGGACAATCTTGCTTTCCTACAGCGCTGGTTCACTGAATTCCCAGAGTACTCAAATAAAGACTTCTTCATTGCAGGGTCGAGCTATGCAGGTCATTATGTTCCACAACTTTCACAACTTATTGTTGAAACCAAGACCAAGTTCAATCTCAAGGGGATAGCTATAGGGAATCCACTTCTGGAATTCAATACTGATGCAAACTCCAGAGCTGAGTTCCTTTGGTCCCACGGACTGATATCAGATGCAACTTACGAATTATTCACTAGAGCCTGCAACTATTCCACAATATTTAGGATTACGCGAATTCAAAATAGGAATCTTAGTGGAGTTTGTGCAAGAGTAAATAAGCTTGTTTCTACTGAGGTTAACAAATATACAGATACATTTGATGTCACTCTTGATGTCTGTTTGTCATCAGTCGATCAACAGGCTTATGCACTTAATCCTATGGTGCAGCAAAAGACAGAGAAGATAGATGTTTGTGTGGAAGATAAAACAACGACATACTTAAACAGGAAAGAAGTGCAGAAAGCTCTCCATGCTAAGCTTGTTGGAGTCACCAAATGGTCATCTTGCAGCGAAGTTGTCCATTATGACTATGAGAATTTTGAGATACCAACAATTCCTATTCTAGGGTCACTTGTTAAGTCTGGCATCCGGGTTCTTGTATACAGTGGAGATCAAGATTCAGTCGTCCCATTGCTATCATCGCGATCACTAGTGAACGGATTAGCCAAAGAACTTGGACTGAATACAACAGTGGCCTATAGAGCCTGGTTTGAGGGAAAACAGGTAGCAGGATGGACACAGGTATATGGAGACATATTATCATATGCAACCATAAGAGGAGCATCTCATTCGCCTCCCTTAACTCAACCAGAGAGATCACTAGTGCTATTTAAAGCATTTCTGGAAGGAAAGCCACTACCAACAATTATCTAA 1371 0.4143 MIATIIIVVALTLEGVSSVPEADKISTLPGQPPVKFVQYSGYITVDEQQQRAMFYYFAEAEDDPASKPLVLWLAGGPACSSVGLGAFEEHGPFKPGDNNVLLKNDYSWNKEANMLYLESTAGVGFSYSTNTSFYDLVNDEITARDNLAFLQRWFTEFPEYSNKDFFIAGSSYAGHYVPQLSQLIVETKTKFNLKGIAIGNPLLEFNTDANSRAEFLWSHGLISDATYELFTRACNYSTIFRITRIQNRNLSGVCARVNKLVSTEVNKYTDTFDVTLDVCLSSVDQQAYALNPMVQQKTEKIDVCVEDKTTTYLNRKEVQKALHAKLVGVTKWSSCSEVVHYDYENFEIPTIPILGSLVKSGIRVLVYSGDQDSVVPLLSSRSLVNGLAKELGLNTTVAYRAWFEGKQVAGWTQVYGDILSYATIRGASHSPPLTQPERSLVLFKAFLEGKPLPTII 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1888g00004 456 FunFam Carboxypeptidase 350 449 - -
Gabi1888g00004 456 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 436 IPR001563 GO:0004185|GO:0006508
Gabi1888g00004 456 Gene3D - 350 449 - -
Gabi1888g00004 456 Gene3D - 304 340 - -
Gabi1888g00004 456 Gene3D alpha/beta hydrolase 19 280 IPR029058 -
Gabi1888g00004 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 104 116 IPR001563 GO:0004185|GO:0006508
Gabi1888g00004 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 127 IPR001563 GO:0004185|GO:0006508
Gabi1888g00004 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 178 IPR001563 GO:0004185|GO:0006508
Gabi1888g00004 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 419 432 IPR001563 GO:0004185|GO:0006508
Gabi1888g00004 456 Pfam Serine carboxypeptidase 30 449 IPR001563 GO:0004185|GO:0006508
Gabi1888g00004 456 SUPERFAMILY alpha/beta-Hydrolases 27 453 IPR029058 -
Gabi1888g00004 456 FunFam Carboxypeptidase 18 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1888g00004 Gabi-Chr1888 148710 152221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1888g00004 312 452 Calmodulin-binding Proteins AT2G22960 31.206 1.23e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1888g00004 K16297 - gmx:100799900 722.62