Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1884g00020 ATGGACGGCGGCGATCCTGCCATGTCCGATAAGGAGGATGAGGAGGACGCCGCGGCGGACATTCTGTCGCGAGTTCGACTCGTCGATGCTCCCGTACTCTTGTTCGTTTGCTTCCACAAGGCTCTGCGCTCCGAACTTGACCAGCTTCGTGACCTGGCGGAAACGGCGTCGTTGGAGGATGAGACACGCCGTTGCCGAGAATTAATCCTTAAGCTTCGACGAAGATTCGAGTTTCTGAAACTAGCTCTCAAGTATCATTGCGCTGCGGAAGACGAGGTTATCTTTCTTGCACTAGATATACATGTGAAAAATGTGGTAGGTACATTTTCCCTAGAACATAACAGCACCAATGACCTCTTCGATTCTATCTTTAACGTCTTGGATAAGTTGATGGATCCTGGTGAGAATATTTCCAAGCTGTTCCAAGAACTTGTGTTCTGCATTGGCATCTTGCAAACCTCCATTTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTCTGTTGATGCAGAAATTATCTACTAAAGAGCAGGCCTCACTTGTGTGGCAATTCATGTGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGCATCCTTCCTTTCTGCAGACAAACAAGTGGAATTTACTCAGTGTTTAAATGAAATCGCGCCAATGGAAAAAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTGGAAGCAACAAGCAAACCTTCACTGAGACCTATTTTCAGAGTGAAGAAGTTCAAGGTGCTGATGAATTCCTACATATAGAAAGTACACTTGGATTGAGTTCTTGTAATAGGAACTCCGAAGATATTTCAAGTTGGATGAAAGTGAATGGCCAAGAAATAGAAGATGAGGTCAATCAGGTTAATGTTCTTCATCTTTGGCATGATGCTATCAAGAAAGATTTGAAAGAAATTCTGAAAGAACTTTATCTATTAAGAAAATCCAGCTGTTTCCAGAATTTAGACTCAATACTTATCCAACTAAAATTCTTTGCTGATGTCCTCATCTTCTACAGCAATGCTCAGAAGAAATTCTTTCATCCTGTACTGAATAAAATATCTAATGGCTGGTTGTCCAAGTCTGTCGAACAATTTCTTGGTGGAAGTCACATTGAAGATATACAGCAGTTGCTATTTTATAACTCAGAAAGTGGAATGCCTTTGAGTAAATTCGTAGAGAAGCTTTGCAGAAAACTTGAATCATTTGTATCAGGAGTCAACAAACAATTTGCTTTTCAAGAAATTGAGGTATTTCCTGTCATTGGAAAGAACTGCAGAAATGGAATGCAAGAGAGACTTTTAAACTTGAGCCTGCATATGATGCCACTTGGGTTACTAAAATGTGTTATAACTTGGTTTTCAGTTCACTTGTCTGAAAAGGAATCCATGTCCATTCTCTATTGCATAAAGAAAGGAAATAATTTTGCCTGTAAAGCTTTTGCATCACTGTTACACGAGTGGTTCCGCATTGGTTATTCAGGTAAAACCTCCATTGAAAAATTCCGACAGGACTTGCAGCATATGTTCAAAAGCCGATGCTCTATTATACCCGAGCAAATGAAGGAAGCTCCAGGATTTTCTTTCTTAAATTCTGACAAGCAGCCTCATAAAATCTCTGGCAAGAGTTGTTTGTCTTATTCATCATCTTCTGCATCCAACAATGTGAACAAATACGAGACACCATACTCCACAGGGATAAATCTGCATATATTTTTCCCTGCCACAGTTGTGAAGTTGCATCAGCATCCTAGATTTCATGCAGCAAATAGTTGTTCTAATTCCTTTCTTGACGATCCAAAACCAATTGACCTAATATTTTTCTTTCACAAGGCTATCAAGAAAGATTTGGATTACCTAGTTCTTGGCTCAGCTCAGTTAGAAGAAAATGATAAGTTGCTTGTGGACTTCCACAAACGATTCCGTCTTGTATGTTTTCTTCATCAAATACATAGTGATGCAGAGGATGAGATAGCTTTTCCTGCCTTGGAGGCAAGGGGTAAACTTAAAAACATTAGCCTTTCCTACACCTTTGATCACAAGCATGAAGTTGAGCACTTCAGTAAAATATCTCGCATCCTTGATGAGATGTCTGAATTACATCTTTCAGTTTCTACTATTGATTCAGAGATAAGGGAGAAGAGAATGCTAAGGCATCATCGTTTATGCAGGAATCTGCAAGAAATGTGCAAATCAATGCATAATTTTCTTTTTGATCACATAAACCGTGAAGAAATAGAAATTTGGCCAACAATTAGAGAATTCTTCTCAAGTCAGGAGCAGGGGAAGATCATAGGATGCATGCTTGGAAGAATAAGAGCAGAGATATTACAAGATATGATACCTTGGCTAATGGCATCTTTAACACTGGAAGAACAGCAGGTTTTAATGTTCTTATGGTCCATGGCTACTAAACATACAATGTTTGATGAATGGTTAGGTGAATGGTGGGATGGGTATAGTATAGCTAAGGCAACAGAGGGATCAAATGATGCCCCTCCACAAACTATTGAACCACTGGAGATTATATCCAAATATTTATCTGAAGAAGTTCTTAATGAATTACAAGAAGAATCCTCTGCCAATAAAAGCATAAATTCTTTCCAGAAGGATCATATTGGTGGTGATGTTGTGTCATCTAACTCCAATTTTGATGAAAAAGTTAAGGTTCATAGTGCAGAAGAAAATAATAATCAATGTTCAAAAAGCACAAATCAATTTCATGATAATAGCAGACATGCTTGCAATGAAGTAACAGATGTCACAAATCCAATTAACAATGGTCAATCTTTTCAATTTTGTGATAAGTCTGGGCATTACGATCGACTTCTGAAATTGAGTCAAGATGATCTGGAGAGGGTAATAAGAAGGGTGTCCCGTGACTCTTGCTTGGATCCTCAAAAGAAGTCATACATAATACAGAACCTACTAATGAGCCGTTGGATTATTAGACAGAAGATCTCTTCTACAGAAGTCTTTATCAAAAGCGATGGACAGGAATTTCCTGGGAAGCATCCATCTCACAGGGACCCTCACAATCTAATCCATGGTTGTAAACACTACAAGAGAAACTGTAAGCTTTTTGCTCCCTGTTGCAACCAACTTCATACTTGCGTACATTGCCATAATGAGGTATCAGATCATTCAATTGACAGGAAATCTATTACAAAGATGATGTGCATGAAGTGCTTGATAATTCAACCAATCAGTGCCACATGCTCAACAGTTTCTTGCTGTAATTTATCCATGGCGAAATATTACTGCAGGATATGCAAATTATTTGATGATGAAAGGGAAATTTACCACTGTCCCTTTTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTGGACTACTTTCACTGTATGAGTTGCAATGCTTGTATGTCTCGTTCTCTTATGGTCCATACATGCAGGGAGAAATCTTTAGAGGATAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCGGTAAAAGCCCTCCTGTGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACCTGCTTTAACTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGTATGTTAGATACGTTATTGGCTGAAGAGAAAATTTCTGATGAGCTTTCAGGTCAAACTCAGGTCATATTATGTAATGACTGTGAAAAGAAAGGAACAGCCCCCTTCCACTGGCTTTACCGCAAATGCCCTTATTGTGGCTCATACAACACCCGAGTTCTATGA 3783 0.3928 MDGGDPAMSDKEDEEDAAADILSRVRLVDAPVLLFVCFHKALRSELDQLRDLAETASLEDETRRCRELILKLRRRFEFLKLALKYHCAAEDEVIFLALDIHVKNVVGTFSLEHNSTNDLFDSIFNVLDKLMDPGENISKLFQELVFCIGILQTSIYQHMLKEEEQVFPLLMQKLSTKEQASLVWQFMCSVPIMLLEEVLPWMASFLSADKQVEFTQCLNEIAPMEKALQEVLVSWLGSNKQTFTETYFQSEEVQGADEFLHIESTLGLSSCNRNSEDISSWMKVNGQEIEDEVNQVNVLHLWHDAIKKDLKEILKELYLLRKSSCFQNLDSILIQLKFFADVLIFYSNAQKKFFHPVLNKISNGWLSKSVEQFLGGSHIEDIQQLLFYNSESGMPLSKFVEKLCRKLESFVSGVNKQFAFQEIEVFPVIGKNCRNGMQERLLNLSLHMMPLGLLKCVITWFSVHLSEKESMSILYCIKKGNNFACKAFASLLHEWFRIGYSGKTSIEKFRQDLQHMFKSRCSIIPEQMKEAPGFSFLNSDKQPHKISGKSCLSYSSSSASNNVNKYETPYSTGINLHIFFPATVVKLHQHPRFHAANSCSNSFLDDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEENDKLLVDFHKRFRLVCFLHQIHSDAEDEIAFPALEARGKLKNISLSYTFDHKHEVEHFSKISRILDEMSELHLSVSTIDSEIREKRMLRHHRLCRNLQEMCKSMHNFLFDHINREEIEIWPTIREFFSSQEQGKIIGCMLGRIRAEILQDMIPWLMASLTLEEQQVLMFLWSMATKHTMFDEWLGEWWDGYSIAKATEGSNDAPPQTIEPLEIISKYLSEEVLNELQEESSANKSINSFQKDHIGGDVVSSNSNFDEKVKVHSAEENNNQCSKSTNQFHDNSRHACNEVTDVTNPINNGQSFQFCDKSGHYDRLLKLSQDDLERVIRRVSRDSCLDPQKKSYIIQNLLMSRWIIRQKISSTEVFIKSDGQEFPGKHPSHRDPHNLIHGCKHYKRNCKLFAPCCNQLHTCVHCHNEVSDHSIDRKSITKMMCMKCLIIQPISATCSTVSCCNLSMAKYYCRICKLFDDEREIYHCPFCNLCRVGKGLGVDYFHCMSCNACMSRSLMVHTCREKSLEDNCPICHEYIFTSCSPVKALLCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFSMLDTLLAEEKISDELSGQTQVILCNDCEKKGTAPFHWLYRKCPYCGSYNTRVL 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1884g00020 1260 Gene3D nmb1532 protein domain like 605 776 - -
Gabi1884g00020 1260 Gene3D nmb1532 protein domain like 30 188 - -
Gabi1884g00020 1260 CDD Hr-like 611 757 - -
Gabi1884g00020 1260 CDD Hr-like 38 168 - -
Gabi1884g00020 1260 Pfam CHY zinc finger 1025 1100 IPR008913 GO:0008270
Gabi1884g00020 1260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1147 1198 IPR013083 -
Gabi1884g00020 1260 SUPERFAMILY RING/U-box 1153 1203 - -
Gabi1884g00020 1260 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 654 1260 - -
Gabi1884g00020 1260 CDD RING-H2_Pirh2-like 1153 1196 - -
Gabi1884g00020 1260 ProSiteProfiles Zinc finger RING-type profile. 1154 1196 IPR001841 -
Gabi1884g00020 1260 Pfam Zinc-ribbon 1201 1258 IPR039512 -
Gabi1884g00020 1260 ProSiteProfiles Zinc finger CHY-type profile. 1018 1087 IPR008913 GO:0008270
Gabi1884g00020 1260 SMART ring_2 1154 1195 IPR001841 -
Gabi1884g00020 1260 SUPERFAMILY Zinc hairpin stack 1091 1145 IPR037275 -
Gabi1884g00020 1260 SUPERFAMILY CHY zinc finger-like 1018 1082 IPR037274 GO:0008270
Gabi1884g00020 1260 Coils Coil 39 59 - -
Gabi1884g00020 1260 FunFam Zinc finger protein-related isoform 1 1149 1198 - -
Gabi1884g00020 1260 Gene3D - 1225 1260 - -
Gabi1884g00020 1260 ProSiteProfiles Zinc finger CTCHY-type profile. 1090 1153 IPR017921 -
Gabi1884g00020 1260 Pfam Hemerythrin HHE cation binding domain 39 170 IPR012312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1884g00020 Gabi-Chr1884 126639 142676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1884g00020 30 852 C2H2 Transcription Factor Family AT3G18290 32.727 2.34e-126 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1884g00020 K16276 - gmx:100802706 2113.58