Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1884g00019 ATGACCCTTAAGGGTGGAACAACTCAGGCATGTGCAGCATGCAAATACCAGAGAAGAAAGTGCACTCCTGAATGCCTTCTTGCTCCATACTTCCCTGCAGACCAACCCAAGATTTTTCAAAATGTCCACAAGCTATTTGGAGTGAGCAACATCACAAAGTTATTAAAGATCTTGGAGCCTACTCAGAAGAAAATAGCTATGGACTCTATCATTATTCAAGCTAATTATAGAGATAAGTATCCTGTTCATGGCTGTTGGGAGGAAATCTGCAGGCTACAATACCAAATATGGTTGGTTGAAGAAGAGCTTCATGCTGTTTATCAACAGCTTGAAATGTTCAGGCAACACCATCACCATCAAGTCACTTCCATTCCTGATGATGTCACTTCACAATTAGAATTGGGAATGGCACCAAGGACTAATGCCAATGCCAATGCCAATGCCAATGCCCTCCCACTCTTTAATCATACTCCACAACCACAGACTTACAACAACACAGTTGCTGCTTTGTCTCTATCTCAGCAACATTCCTACTCCAACAGCAACAGTGTTGATTATAACCCCTTGTACATGGATTCCAAGGATAATGCCACAAACCCTTTGTGGCTTCAGCACCCTTATGCAAATAACAATAGCAATTCCATAGGCATGCCAACTCAGTTGGTTGCCTCACAGTCACAGCCACTAGCCATTCAACAAGAAGTTGTTGAAGATTATGATGAGATGCATCCATTTTTTGATACAATTGATGATAGGCAATCTTACATTTATTCCAAGGAGGCTTATGAGTCAAGTTCAGAAGAATCACTGAAAGATACGACAAAGTGCACTGAGCATGTTTCTGAGAATGAATTGAAGAGTGCTGCTGCATGCTTCAGCCTAGTGTCAACTGATCGGTGA 900 0.4178 MTLKGGTTQACAACKYQRRKCTPECLLAPYFPADQPKIFQNVHKLFGVSNITKLLKILEPTQKKIAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWLVEEELHAVYQQLEMFRQHHHHQVTSIPDDVTSQLELGMAPRTNANANANANALPLFNHTPQPQTYNNTVAALSLSQQHSYSNSNSVDYNPLYMDSKDNATNPLWLQHPYANNNSNSIGMPTQLVASQSQPLAIQQEVVEDYDEMHPFFDTIDDRQSYIYSKEAYESSSEESLKDTTKCTEHVSENELKSAAACFSLVSTDR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1884g00019 299 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Gabi1884g00019 299 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Gabi1884g00019 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1884g00019 Gabi-Chr1884 122836 123950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1884g00019 1 261 AS2 family AT3G47870 40.594 1.52e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi1884g00019 LOB 5.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1884g00019 - - lang:109357116 410.994