Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1884g00018 ATGGGACACAAAAAGCGAAACCATGCTCCGCGCTCGAAACAATCGCCGGCGGCTTCTCTGGTGGCGCAATCGGCCAACGGCGGAGCCGCCAATGGTTCCATTTCACCCGACCATGACTCCTGCAGCGTTTCTGAAAATAATATTGATAACCCTAGCAAGATCGAATTGGCTCCTCAATTTGAGGGTTCCGATTACGATTACTCCACAATCAAACTCGAATGCGAGCGAGCCCTCACTGCGTTTCGGCGCGGTAACCACAACAGGGCACTGAAGCTCATGAAGGAGTTGTGCTCGAAAGACGAGGACTCGGCTTACTTGGCGTTCGCTCACCGAGTTCAGGGCTTTGTGTTTATCAAAGTGGCGTCCATTCTCAATGACCCGAGCGCGAAGCAACGGCATTTGAAGAATGCCATTGAATCCGCGCGGAGAGCAGCTGAGCTGGCGCCCAATTCAGTTGAGTATGCGCATTTTTATGCCAATTTGATGTTGGAGGTAGCAACTGAAGGCAAGGAATATGAGGAGGTGGTGCATGAGTGTGAGAGGGCGCTTGCGGTTGAAAACCCCAATGATCCTGCGAAGGAGACCTTGCAGGATGAGAGCGAGCAGAAGATATCAACTGTGGAAGACCGGATAGCACATGTACAGAATGAATTGAGGCAGCTAATTCAGAAGTCAAACATAGCTTCATTGTCCACTTGGATGAAAAATCTGAGTAATGGAGAGGAGAGATTTCGGTTGATTCCGATAAGGAGGACCGCGGAGGACCCAATGGAGGTGAGGTTGGTTCAAACTAGAAGGCCTAATGAGATCAAGAAGGTGACCAAAACACCCGAGGAAAGAAGAAAAGAAATTGAAGTTCGAGTGGCTGCTGCAAGGCTGTTGCAGCAAAAGCCAGAGTCTCCCCAATCTCCGAACGAAGGAGATAGGGATGATAGAGCACCAGATTCATCTTCAGGATTTAGTCAGAGGGTGGGTGATAGGCGAAAGCATGGAAATATGAGAAAGAATGGTTCTACAGATGAAAGGAAGAACTGGGTGCTCTCATATTGGAATTCAGTGAGTGTGGATATGAAGAAGGACTTGCTTAAGATTAAAATTTGTGATCTCAAGTCCCACTTTGGGTCTTCGAAGGATCCTTTGCCGAAAGATATTTTGTCAGAAGCTTTGTCATATGCTGGGCCCAATAAAACTTGGAAGTTCTGGCTTTGCTGCCATTGTGATGAGAAATATTGTAATTCAGAATCTCACAGGCAGCATGTTGTGCAGGAACACATGGGGAATCTCGTGCCAAAATTGCGGAGACTTTTGCCCCAAAATGTTGACAATGAATGGATTGAGATGATTCTTAATTGTTCTTGGAGGCCTGTGGATGTCTCAGCTGCGATTAAAATGCTTGATAATAAAGCGAAATTCAATGGTTCTTCGTTTCTTGAGGATTCGTACTTGGGTCATCATACTCAGGACTACAATGATTGTTTTAAAGATGCAAGCGGCTCTTACCATGAGAAGGAAAATGTAGGGTACAATCATTGCAATTGTACAACAGAAAGTAGTAACTGTCGTAAAATATCAGAAAGTGATATCAAAGAAGGTGCTGAAGACCGACAGTGTACGGCTAATCTTACTGCTGATTGTTGGCCTGTTTCTGATGATTCTGAGCGTGCAAAACTTCTGGAGAAAATTCATGCAGTATTCATGATGCTTATTAGACACAAATGTCTTGCTGCGAGTCATCTTAACAAGGTCATACAATTTACTATGGGAGAGATACAAGGTCTTGCTGTTGGTTCTCAACTTCTAAACCATGGTGTAGACCAAACACCAATGTGCATATGCTTTCTGGGAGCTTCACAGCTTAAGAAAATTCTCCAATTTCTCCAGGAAATATCTCATGCTTGTGGGTTGGGTAGGTATGCTGATGAAAGTAGTAGTCCCATGAATGATTTGCACAATATCAGTCAAGGTCCTGAGATCAAAGAGAAGATTGTTCTCGATGGAGATGCATCATGCATTCTTCTGGATGAGGGTTTACTGCCAACACAAGCTCAGGGGGCTATCTTGGATGATGTGACCACCCCAAGTTCTCCTGATGGAATTTCACAGTGTAATGATGCTTTGCTATGCTGGATATTTTCAAGTTCACCTATTGGGGATCAATTGACATCATGGATGAGGACCAGAGAAGATAAAAAACATCAAGGAATGGATATTGTCCAGATGCTCGAGAAGGAGTTTTATCACCTACAAAGCTTATGTGAGAAGAAGTGTGATCGCATAAGTTATGAGGAAGCACTGCAGACAGTAGAGGATCTTTGCCTTGAAGAAGGTAAGAAGAGGGAAAATGTTGGTGACTTTGTCCAGCAAAGCTATGAGTCTGTTTTAAAAAAGCGGAGAGAAGAGCTCGTTGAGAGTGAGAATGATGTGATGTATGTCAGCAATAGGTTTGAATTGGATGCTATATCAAATGTTTTGCAAGAAGCAGAAGCAATGAATGTTAATAAATTTGGCTATGAGGAAACTTATGCTGGTGTGACTTCTCAGTTATGTGACTTGGAATCGGGTGAGGAAGATGAATGGAGAATGAAGGACTTCTTGCATCAAATGGATAGTTGTATAGAAATTGCTATTCAGAAACTAAAAGAGCACTTATCTATAGAGCTTAGCAAAATTGATGCACGAATCATTAGAAATGTTACAGAGATGCAACAATTGGAACTCAAGCTTGGGCCTGTTTCTGCTTATGATTATCGAGCAATTTTAGTGCCTTTAGTGAAGTCGTACCTAAGGGCACTTTTGGAAGGTTTGGCTGAGAAAGATGCAAGAGAGAAGTCTGATGCTGCAAGCGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAGAAAGGCTGTTAAAGGGGGAAATGAGAACACGAGACATCTGGAGAAGACAAAAGATAAGAAGAAGAATAGAGATCATAGAAAAACAAGAGATTCCAAGGCCACAAGCAGTCATGTGCAGCTCTTGCTTCGTTCTACAACACCTGATTCCAGTCTAGTTGCACCTGATAGTGATCATGAGGTTGTTTCTGTTAATGGTGATGACTTGGAACAACATGAAGAGGAATTTAGGCGCAAAACTGAGCTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAATTTCAACGAAGGATTGAAAATGAAGCAAAACAGAAGCATCTTGCTGAGCAACAAAAGAAATCATCTGGGACATATTTAGAGGAAATGCCGGACAAGCTTCATGATTATCAATTGAAGGCGATTGCTGATTGTCTGGATGCGCACAAACATTTGGCAAAGGAGAATGGGTGCCCAAGCAATCTGGATGGTGTGCTTGTCACCACAGCGAATGGTTCCATGGTGCCAACTAAATCTTTAGCTGATTCAGCTACCCAAAAGATTAATTATTTGCATCAGTCAAAAGTTAAACAAGATTTGCCTAATGGAGTTGGTCTGGAGAATGGTCTTCCTTTGCCTGATCGGCGTGCAGGAAAAAAGCACAAACGGCATAGGAATTCTTCCAAAATGGTTGATGGAAAGTTTGAATCTGTCTCATTTGAAAAGGAGAATATTGAGGATATGCATACTGAATGTAACGTGAGAGAGCAGGCTAAATTCAATAACAATCAAGATGCTAACAATGTGTGGGAGAACAATGGATCAAAGGTAATGAAAGAGTTGCAAGTGGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTACGCCAAAGCCTGGACACATATCAAGCACGTGGGAATTTGCATTCGGTTTCCGGTTTAAGAGCGTCTCACAGAGCTTCTTCACAAGTAGATTGTTTGGATTGTCCACCTGTGGAAGAATCAAGTGAGGATGTCAATGGAGCTACTTTACTTGGTACTGGACTGAAGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTACGACGCTTTCGGGTGGGATTTCTTGGCAGATCAAAATCAGAGCATGATCATGTAGGTAATCCTTGTGTTGTCTGTGCATTGTATGAAATTTTCACTGCGCTGGACCTTGCACCAAAGGATTCAACAAGAGAAGCAGTTGCACCTACTTCCCTGCGGATAGCTCTAAGCAACCTATATCCTCATAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGGTACTGGCAGTAATATTTGACTGCCTACATCAATCATTTACTCGTGGTTCAAGTGTTTCTGATTCAGAATCAGTGGAAAGCAATTGCATGGGATCTTGGGATTGTGCAAACAGTAGTTGTATAGCACATTCACTTTTTGGAATGGACATTTTTGAACAAATGAACTGCTATCACTGTGGTCGGGAGTCCCGACATTTGAAGTATACTTCCTTCTTTCACAATATAAATGCCAATTCCCTCCGGACAATGAAGGTTATGTTTGCTCAAAGCTCCTTTGATAAGCTTTTGAATCTCGTGGAGATGAACCATCAGTTGGCTTGTGATCTAGAAGTTGGTGGCTGTGGCAAGCTCAATCACATACATCACTTTCTTTCAACTCCACCCCATGTTTTTATGACAGTTTTAGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAACAGCAACTCTGGGCGCCCTGAGCACCAAGATAGATATCAGTGTCCTGTATCGGGGTTTAGATCCTAAAAGCACCCATAGCTTGGTTTCGGTGGTTTGCTACTATGGTCAGCATTATCATTGCTTTGCTTATAGTCATGACCATGAACAATGGATTATGTATGATGACAAGACTGTCAAGATAATTGGTGGATGGGCGGATGTTCTCACAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4911 0.4266 MGHKKRNHAPRSKQSPAASLVAQSANGGAANGSISPDHDSCSVSENNIDNPSKIELAPQFEGSDYDYSTIKLECERALTAFRRGNHNRALKLMKELCSKDEDSAYLAFAHRVQGFVFIKVASILNDPSAKQRHLKNAIESARRAAELAPNSVEYAHFYANLMLEVATEGKEYEEVVHECERALAVENPNDPAKETLQDESEQKISTVEDRIAHVQNELRQLIQKSNIASLSTWMKNLSNGEERFRLIPIRRTAEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKPESPQSPNEGDRDDRAPDSSSGFSQRVGDRRKHGNMRKNGSTDERKNWVLSYWNSVSVDMKKDLLKIKICDLKSHFGSSKDPLPKDILSEALSYAGPNKTWKFWLCCHCDEKYCNSESHRQHVVQEHMGNLVPKLRRLLPQNVDNEWIEMILNCSWRPVDVSAAIKMLDNKAKFNGSSFLEDSYLGHHTQDYNDCFKDASGSYHEKENVGYNHCNCTTESSNCRKISESDIKEGAEDRQCTANLTADCWPVSDDSERAKLLEKIHAVFMMLIRHKCLAASHLNKVIQFTMGEIQGLAVGSQLLNHGVDQTPMCICFLGASQLKKILQFLQEISHACGLGRYADESSSPMNDLHNISQGPEIKEKIVLDGDASCILLDEGLLPTQAQGAILDDVTTPSSPDGISQCNDALLCWIFSSSPIGDQLTSWMRTREDKKHQGMDIVQMLEKEFYHLQSLCEKKCDRISYEEALQTVEDLCLEEGKKRENVGDFVQQSYESVLKKRREELVESENDVMYVSNRFELDAISNVLQEAEAMNVNKFGYEETYAGVTSQLCDLESGEEDEWRMKDFLHQMDSCIEIAIQKLKEHLSIELSKIDARIIRNVTEMQQLELKLGPVSAYDYRAILVPLVKSYLRALLEGLAEKDAREKSDAASEAFLAELALDSRKAVKGGNENTRHLEKTKDKKKNRDHRKTRDSKATSSHVQLLLRSTTPDSSLVAPDSDHEVVSVNGDDLEQHEEEFRRKTELEEEEKKLEETLEFQRRIENEAKQKHLAEQQKKSSGTYLEEMPDKLHDYQLKAIADCLDAHKHLAKENGCPSNLDGVLVTTANGSMVPTKSLADSATQKINYLHQSKVKQDLPNGVGLENGLPLPDRRAGKKHKRHRNSSKMVDGKFESVSFEKENIEDMHTECNVREQAKFNNNQDANNVWENNGSKVMKELQVEDEEEERFQADLKMAVRQSLDTYQARGNLHSVSGLRASHRASSQVDCLDCPPVEESSEDVNGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVGFLGRSKSEHDHVGNPCVVCALYEIFTALDLAPKDSTREAVAPTSLRIALSNLYPHSNFFQEAQMNDASEVLAVIFDCLHQSFTRGSSVSDSESVESNCMGSWDCANSSCIAHSLFGMDIFEQMNCYHCGRESRHLKYTSFFHNINANSLRTMKVMFAQSSFDKLLNLVEMNHQLACDLEVGGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDITATLGALSTKIDISVLYRGLDPKSTHSLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKIIGGWADVLTMCERGHLQPQVLFFEAVN 1636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1884g00018 1636 Coils Coil 197 224 - -
Gabi1884g00018 1636 MobiDBLite consensus disorder prediction 1 47 - -
Gabi1884g00018 1636 MobiDBLite consensus disorder prediction 303 339 - -
Gabi1884g00018 1636 MobiDBLite consensus disorder prediction 292 339 - -
Gabi1884g00018 1636 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1635 - -
Gabi1884g00018 1636 Gene3D Cysteine proteinases 1288 1634 - -
Gabi1884g00018 1636 MobiDBLite consensus disorder prediction 963 1042 - -
Gabi1884g00018 1636 MobiDBLite consensus disorder prediction 12 47 - -
Gabi1884g00018 1636 Gene3D Tetratricopeptide repeat domain 65 211 IPR011990 GO:0005515
Gabi1884g00018 1636 SUPERFAMILY Cysteine proteinases 1303 1633 IPR038765 -
Gabi1884g00018 1636 Coils Coil 1028 1065 - -
Gabi1884g00018 1636 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1303 1635 IPR028889 -
Gabi1884g00018 1636 Pfam Protein of unknown function (DUF629) 347 874 IPR006865 -
Gabi1884g00018 1636 CDD Peptidase_C19 1394 1633 - -
Gabi1884g00018 1636 SUPERFAMILY TPR-like 68 191 IPR011990 GO:0005515
Gabi1884g00018 1636 Pfam Protein of unknown function (DUF627) 76 187 IPR006866 -
Gabi1884g00018 1636 Pfam Ubiquitin carboxyl-terminal hydrolase 1304 1611 IPR001394 GO:0004843|GO:0016579
Gabi1884g00018 1636 MobiDBLite consensus disorder prediction 1151 1180 - -
Gabi1884g00018 1636 MobiDBLite consensus disorder prediction 994 1012 - -
Gabi1884g00018 1636 MobiDBLite consensus disorder prediction 1020 1042 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1884g00018 Gabi-Chr1884 106392 116803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1884g00018 66 1633 C2H2 Transcription Factor Family AT3G47890 56.195 0.0 1721