Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1884g00016 ATGGGACACAAAAAGCGAAACCATGCTCCGCGCTCGAAACAATCGCCGGCGGCTTCTCTGGTGGCGCAATCGGCCAACGGCGGAGCCGCCAATGGTTCCATTTCACCCGACCATGACTCCTGCAGCGTTTCTGAAAATAATATTGATAACCCTAGCAAGATCGAATTGGCTCCTCAATTTGAGGGTTCCGATTACGATTACTCCACAATCAAACTCGAATGCGAGCGAGCCCTCACTGCGTTTCGGCGCGGTAACCACAACAGGGCACTGAAGCTCATGAAGGAGTTGTGCTCGAAAGACGAGGACTCGGCTTACTTGGCGTTCGCTCACCGAGTTCAGGGCTTTGTGTTTATCAAAGTGGCGTCCATTCTCAATGACCCGAGCGCGAAGCAACGGCATTTGAAGAATGCCATTGAATCCGCGCGGAGAGCAGCTGAGCTGGCGCCCAATTCAGTTGAGTATGCGCATTTTTATGCCAATTTGATGTTGGAGGTAGCAACTGAAGGCAAGGAATATGAGGAGGTGGTGCATGAGTGTGAGAGGGCGCTTGCGGTTGAAAACCCCAATGATCCTGCGAAGGAGACCTTGCAGGATGAGAGCGAGCAGAAGATATCAACTGTGGAAGACCGGATAGCACATGTACAGAATGAATTGAGGCAGCTAATTCAGAAGTCAAACATAGCTTCATTGTCCACTTGGATGAAAAATCTGAGTAATGGAGAGGAGAGATTTCGGTTGATTCCGATAAGGAGGACCGCGGAGGACCCAATGGAGGTGAGGTTGGTTCAAACTAGAAGGCCTAATGAGATCAAGAAGGTGACCAAAACACCCGAGGAAAGAAGAAAAGAAATTGAAGTTCGAGTGGCTGCTGCAAGGCTGTTGCAGCAAAAGCCAGAGTCTCCCCAATCTCCGAACGAAGGAGATAGGGATGATAGAGCACCAGATTCATCTTCAGGATTTAGTCAGAGGGTGGGTGATAGGCGAAAGCATGGAAATATGAGAAAGAATGGTTCTACAGATGAAAGGAAGAACTGGGTGCTCTCATATTGGAATTCAGTGAGTGTGGATATGAAGAAGGACTTGCTTAAGATTAAAATTTGTGATCTCAAGTCCCACTTTGGGTCTTCGAAGGATCCTTTGCCGAAAGATATTTTGTCAGAAGCTTTGTCATATGCTGGGCCCAATAAAACTTGGAAGTTCTGGCTTTGCTGCCATTGTGATGAGAAATATTGTAATTCAGAATCTCACAGGCAGCATGTTGTGCAGGAACACATGGGGAATCTCGTGCCAAAATTGCGGAGACTTTTGCCCCAAAATGTTGACAATGAATGGATTGAGATGATTCTTAATTGTTCTTGGAGGCCTGTGGATGTCTCAGCTGCGATTAAAATGCTTGATAATAAAGCGAAATTCAATGGTTCTTCGTTTCTTGAGGATTCGTACTTGGGTCATCATACTCAGGACTACAATGATTGTTTTAAAGATGCAAGCGGCTCTTACCATGAGAAGGAAAATGTAGGGTACAATCATTGCAATTGTACAACAGAAAGTAGTAACTGTCGTAAAATATCAGAAAGTGATATCAAAGAAGGTGCTGAAGACCGACAGTGTACGGCTAATCTTACTGCTGATTGTTGGCCTGTTTCTGATGATTCTGAGCGTGCAAAACTTCTGGAGAAAATTCATGCAGTATTCATGATGCTTATTAGACACAAATGTCTTGCTGCGAGTCATCTTAACAAGGTCATACAATTTACTATGGGAGAGATACAAGGTCTTGCTGTTGGTTCTCAACTTCTAAACCATGGTGTAGACCAAACACCAATGTGCATATGCTTTCTGGGAGCTTCACAGCTTAAGAAAATTCTCCAATTTCTCCAGGAAATATCTCATGCTTGTGGGTTGGGTAGGTATGCTGATGAAAGTAGTAGTCCCATGAATGATTTGCACAATATCAGTCAAGGTCCTGAGATCAAAGAGAAGATTGTTCTCGATGGAGATGCATCATGCATTCTTCTGGATGAGGGTTTACTGCCAACACAAGCTCAGGGGGCTATCTTGGATGATGTGACCACCCCAAGTTCTCCTGATGGAATTTCACAGTGTAATGATGCTTTGCTATGCTGGATATTTTCAAGTTCACCTATTGGGGATCAATTGACATCATGGATGAGGACCAGAGAAGATAAAAAACATCAAGGAATGGATATTGTCCAGATGCTCGAGAAGGAGTTTTATCACCTACAAAGCTTATGTGAGAAGAAGTGTGATCGCATAAGTTATGAGGAAGCACTGCAGACAGTAGAGGATCTTTGCCTTGAAGAAGGTAAGAAGAGGGAAAATGTTGGTGACTTTGTCCAGCAAAGCTATGAGTCTGTTTTAAAAAAGCGGAGAGAAGAGCTCGTTGAGAGTGAGAATGATGTGATGTATGTCAGCAATAGGTTTGAATTGGATGCTATATCAAATGTTTTGCAAGAAGCAGAAGCAATGAATGTTAATAAATTTGGCTATGAGGAAACTTATGCTGGTGTGACTTCTCAGTTATGTGACTTGGAATCGGGTGAGGAAGATGAATGGAGAATGAAGGACTTCTTGCATCAAATGGATAGTTGTATAGAAATTGCTATTCAGAAACTAAAAGAGCACTTATCTATAGAGCTTAGCAAAATTGATGCACGAATCATTAGAAATGTTACAGAGATGCAACAATTGGAACTCAAGCTTGGGCCTGTTTCTGCTTATGATTATCGAGCAATTTTAGTGCCTTTAGTGAAGTCGTACCTAAGGGCACTTTTGGAAGGTTTGGCTGAGAAAGATGCAAGAGAGAAGTCTGATGCTGCAAGCGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAGAAAGGCTGTTAAAGGGGGAAATGAGAACACGAGACATCTGGAGAAGACAAAAGATAAGAAGAAGAATAGAGATCATAGAAAAACAAGAGATTCCAAGGCCACAAGCAGTCATGTGCAGCTCTTGCTTCGTTCTACAACACCTGATTCCAGTCTAGTTGCACCTGATAGTGATCATGAGGTTGTTTCTGTTAATGGTGATGACTTGGAACAACATGAAGAGGAATTTAGGCGCAAAACTGAGCTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAATTTCAACGAAGGATTGAAAATGAAGCAAAACAGAAGCATCTTGCTGAGCAACAAAAGAAATCATCTGGGACATATTTAGAGGAAATGCCGGACAAGCTTCATGATTATCAATTGAAGGCGATTGCTGATTGTCTGGATGCGCACAAACATGAGCAGTTGGCAAAGGAGAATGGGTGCCCAAGCAATCTGGATGGTGTGCTTGTCACCACAGCGAATGGTTCCATGGTGCCAACTAAATCTTTAGCTGATTCAGCTACCCAAAAGATTAATTATTTGCATCAGTCAAAAGTTAAACAAGATTTGCCTAATGGAGTTGGTCTGGAGAATGGTCTTCCTTTGCCTGATCGGCGTGCAGGAAAAAAGCACAAACGGCATAGGAATTCTTCCAAAATGGTTGATGGAAAGTTTGAATCTGTCTCATTTGAAAAGGAGAATATTGAGGATATGCATACTGAATGTAACGTGAGAGAGCAGGCTAAATTCAATAACAATCAAGATGCTAACAATGTGTGGGAGAACAATGGATCAAAGGTAATGAAAGAGTTGCAAGTGGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTACGCCAAAGCCTGGACACATATCAAGCACGTGGGAATTTGCATTCGGTTTCCGGTTTAAGAGCGTCTCACAGAGCTTCTTCACAAGTAGATTGTTTGGATTGTCCACCTGTGGAAGAATCAAGTGAGGATGTCAATGGAGCTACTTTACTTGGTACTGGACTGAAGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTACGACGCTTTCGGGTGGGATTTCTTGGCAGATCAAAATCAGAGCATGATCATGTAGGTAATCCTTGTGTTGTCTGTGCATTGTATGAAATTTTCACTGCGCTGGACCTTGCACCAAAGGATTCAACAAGAGAAGCAGTTGCACCTACTTCCCTGCGGATAGCTCTAAGCAACCTATATCCTCATAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAGGTACTGGCAGTAATATTTGACTGCCTACATCAATCATTTACTCGTGGTTCAAGTGTTTCTGATTCAGAATCAGTGGAAAGCAATTGCATGGGATCTTGGGATTGTGCAAACAGTAGTTGTATAGCACATTCACTTTTTGGAATGGACATTTTTGAACAAATGAACTGCTATCACTGTGGTCGGGAGTCCCGACATTTGAAGTATACTTCCTTCTTTCACAATATAAATGCCAATTCCCTCCGGACAATGAAGGTTATGTTTGCTCAAAGCTCCTTTGATAAGCTTTTGAATCTCGTGGAGATGAACCATCAGTTGGCTTGTGATCTAGAAGTTGGTGGCTGTGGCAAGCTCAATCACATACATCACTTTCTTTCAACTCCACCCCATGTTTTTATGACAGTTTTAGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAACAGCAACTCTGGGCGCCCTGAGCACCAAGATAGATATCAGTGTCCTGTATCGGGGTTTAGATCCTAAAAGCACCCATAGCTTGGTTTCGGTGGTTTGCTACTATGGTCAGCATTATCATTGCTTTGCTTATAGTCATGACCATGAACAATGGATTATGTATGATGACAAGACTGTCAAGATAATTGGTGGATGGGCGGATGTTCTCACAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4917 0.4269 MGHKKRNHAPRSKQSPAASLVAQSANGGAANGSISPDHDSCSVSENNIDNPSKIELAPQFEGSDYDYSTIKLECERALTAFRRGNHNRALKLMKELCSKDEDSAYLAFAHRVQGFVFIKVASILNDPSAKQRHLKNAIESARRAAELAPNSVEYAHFYANLMLEVATEGKEYEEVVHECERALAVENPNDPAKETLQDESEQKISTVEDRIAHVQNELRQLIQKSNIASLSTWMKNLSNGEERFRLIPIRRTAEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKPESPQSPNEGDRDDRAPDSSSGFSQRVGDRRKHGNMRKNGSTDERKNWVLSYWNSVSVDMKKDLLKIKICDLKSHFGSSKDPLPKDILSEALSYAGPNKTWKFWLCCHCDEKYCNSESHRQHVVQEHMGNLVPKLRRLLPQNVDNEWIEMILNCSWRPVDVSAAIKMLDNKAKFNGSSFLEDSYLGHHTQDYNDCFKDASGSYHEKENVGYNHCNCTTESSNCRKISESDIKEGAEDRQCTANLTADCWPVSDDSERAKLLEKIHAVFMMLIRHKCLAASHLNKVIQFTMGEIQGLAVGSQLLNHGVDQTPMCICFLGASQLKKILQFLQEISHACGLGRYADESSSPMNDLHNISQGPEIKEKIVLDGDASCILLDEGLLPTQAQGAILDDVTTPSSPDGISQCNDALLCWIFSSSPIGDQLTSWMRTREDKKHQGMDIVQMLEKEFYHLQSLCEKKCDRISYEEALQTVEDLCLEEGKKRENVGDFVQQSYESVLKKRREELVESENDVMYVSNRFELDAISNVLQEAEAMNVNKFGYEETYAGVTSQLCDLESGEEDEWRMKDFLHQMDSCIEIAIQKLKEHLSIELSKIDARIIRNVTEMQQLELKLGPVSAYDYRAILVPLVKSYLRALLEGLAEKDAREKSDAASEAFLAELALDSRKAVKGGNENTRHLEKTKDKKKNRDHRKTRDSKATSSHVQLLLRSTTPDSSLVAPDSDHEVVSVNGDDLEQHEEEFRRKTELEEEEKKLEETLEFQRRIENEAKQKHLAEQQKKSSGTYLEEMPDKLHDYQLKAIADCLDAHKHEQLAKENGCPSNLDGVLVTTANGSMVPTKSLADSATQKINYLHQSKVKQDLPNGVGLENGLPLPDRRAGKKHKRHRNSSKMVDGKFESVSFEKENIEDMHTECNVREQAKFNNNQDANNVWENNGSKVMKELQVEDEEEERFQADLKMAVRQSLDTYQARGNLHSVSGLRASHRASSQVDCLDCPPVEESSEDVNGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVGFLGRSKSEHDHVGNPCVVCALYEIFTALDLAPKDSTREAVAPTSLRIALSNLYPHSNFFQEAQMNDASEVLAVIFDCLHQSFTRGSSVSDSESVESNCMGSWDCANSSCIAHSLFGMDIFEQMNCYHCGRESRHLKYTSFFHNINANSLRTMKVMFAQSSFDKLLNLVEMNHQLACDLEVGGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDITATLGALSTKIDISVLYRGLDPKSTHSLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKIIGGWADVLTMCERGHLQPQVLFFEAVN 1638
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi1884g00016 1638 Coils Coil 197 224 - -
Gabi1884g00016 1638 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1305 1637 IPR028889 -
Gabi1884g00016 1638 MobiDBLite consensus disorder prediction 1 47 - -
Gabi1884g00016 1638 MobiDBLite consensus disorder prediction 292 339 - -
Gabi1884g00016 1638 MobiDBLite consensus disorder prediction 303 339 - -
Gabi1884g00016 1638 CDD Peptidase_C19 1396 1635 - -
Gabi1884g00016 1638 MobiDBLite consensus disorder prediction 963 1044 - -
Gabi1884g00016 1638 MobiDBLite consensus disorder prediction 12 47 - -
Gabi1884g00016 1638 MobiDBLite consensus disorder prediction 1153 1182 - -
Gabi1884g00016 1638 Gene3D Tetratricopeptide repeat domain 65 211 IPR011990 GO:0005515
Gabi1884g00016 1638 SUPERFAMILY Cysteine proteinases 1305 1635 IPR038765 -
Gabi1884g00016 1638 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1637 - -
Gabi1884g00016 1638 Coils Coil 1028 1065 - -
Gabi1884g00016 1638 Pfam Protein of unknown function (DUF629) 347 874 IPR006865 -
Gabi1884g00016 1638 Gene3D Cysteine proteinases 1290 1636 - -
Gabi1884g00016 1638 MobiDBLite consensus disorder prediction 1020 1044 - -
Gabi1884g00016 1638 SUPERFAMILY TPR-like 68 191 IPR011990 GO:0005515
Gabi1884g00016 1638 MobiDBLite consensus disorder prediction 994 1012 - -
Gabi1884g00016 1638 Pfam Protein of unknown function (DUF627) 76 187 IPR006866 -
Gabi1884g00016 1638 Pfam Ubiquitin carboxyl-terminal hydrolase 1306 1613 IPR001394 GO:0004843|GO:0016579
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi1884g00016 Gabi-Chr1884 106392 116803 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1884g00016 66 1635 C2H2 Transcription Factor Family AT3G47890 56.258 0.0 1724