Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1884g00015 ATGGGTAATTGCAACACTTGCGTGAGAGCAGATGTAGTAGAAGAGAAGCCGAGCGAGTCGAACCGGGGGAGAAGGAAAAAAACCCAACCGAACCCATACGCTGAGGAAGGGGACCGGTCTGCAGGTCCGGTTCGGGTGCTGAATGATGTGATTCCGGGGATCCGAATCGGGGACAAGTACGTGTTGGGTCGGGAACTGGGTCGGGGCGAGTTCGGGATAACGTACCTATGCACGGACAGGGAAACGAAGCAGGAGCTGGCGTGCAAGTCGATATCGAAGCGGAAGCTGAGGACCGCCGTGGACGTGGAGGACGTGCGGCGGGAGGTGGCGATCATGTCGACGTTGCCGGAGCATCCGAACGTGGTGAAGCTGAAGGCGACTTACGAGGATGAAGAGAATGTGCACCTGGTGATGGAGCTCTGCGAGGGAGGGGAACTCTTCGATAGGATCGTTGCGAGGGGGCATTACAGCGAGCGTGCGGCGGCACACGTGGCAAGGACCATAGCTGAGGTTGTTAGGATGTGCCATTCCAATGGAGTCATGCATAGGGACCTTAAGCCTGAGAATTTTCTCTTTGCTAATAAGAAAGAGAACTCGCTTCTTAAAGCCATTGATTTTGGTCTCTCTGTGTTTTTTAAGCCTGGAATGAGGTTTTCTGAAATTGTTGGGAGTCCTTACTATATGGCGCCGGAGGTTTTGAAGAGGAATTATGGGCCAGAGGTTGATGTGTGGAGTGCTGGAGTCATTCTTTATATTTTGTTATGTGGGGTTCCTCCGTTTTGGGCAGAGACTGAACAAGGGGTTGCTTTGGCGATTTTGAGAGGTGTGATTGACTTCAAGAGGGAGCCTTGGCCTCAGATTTCGGATAGTGCTAAGAGCCTTGTGCGGCAGATGTTGGAACCCGATCCTAAAAAGCGCTTGACGGCTGAACAGGTGCTTGAACATTCCTGGCTACAAAATGCAAAGAAAGCTTCAAATGTTCCATTAGGAGATATTGTGAGGACAAGGCTTAAGCAGTTCTCTGTGATGAATAGATTCAAAAAGAGAGCTCTTCGGGTAATTGCAGAACATTTATCTCTTGAGGAGGTAGAAATAATCAAAGATATGTTTACATTGATGGATACTGACAAAGATGGCAAAGTATCATTCGAGGAACTGAAGGCTGGTATGCGGAAGGTTGGTTCACAATTAGCTGAGCCGGAGATAAAGATGCTGATGGAAGTGGCTGATGTTGATAGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCTGTGACAATTCACTTGCAAAGAATGGAGAATGATGAGCATATCCGCAAAGCATTCATGTTTTTTGACAAAGATGGCAGTGGTTATATTGAGTTAGTTGAGCTAGAGGAAGCATTAGTAGATGAATCAGGAGAAACTGATGCTGATGTATTGAATGACATCATGCGTGAAGTTGACACTGACAAGGATGGTCGCATCAGTTATGAGGAGTTTATGGCCATGATGAAAACTGGAACTGATTGGAGAAAAGCATCTAGGCAGTACTCAAGGGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAGGATGGTTCACTTCAGCTTCATGATGGGATTAGTGGTCAAGCTGTAGTGGTTTGA 1629 0.4745 MGNCNTCVRADVVEEKPSESNRGRRKKTQPNPYAEEGDRSAGPVRVLNDVIPGIRIGDKYVLGRELGRGEFGITYLCTDRETKQELACKSISKRKLRTAVDVEDVRREVAIMSTLPEHPNVVKLKATYEDEENVHLVMELCEGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHSNGVMHRDLKPENFLFANKKENSLLKAIDFGLSVFFKPGMRFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHSWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKRALRVIAEHLSLEEVEIIKDMFTLMDTDKDGKVSFEELKAGMRKVGSQLAEPEIKMLMEVADVDRNGVLDYGEFVAVTIHLQRMENDEHIRKAFMFFDKDGSGYIELVELEEALVDESGETDADVLNDIMREVDTDKDGRISYEEFMAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAVVV 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1884g00015 542 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Gabi1884g00015 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 57 494 - -
Gabi1884g00015 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Gabi1884g00015 542 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Gabi1884g00015 542 SMART efh_1 437 465 IPR002048 GO:0005509
Gabi1884g00015 542 SMART efh_1 473 501 IPR002048 GO:0005509
Gabi1884g00015 542 SMART efh_1 401 429 IPR002048 GO:0005509
Gabi1884g00015 542 SMART efh_1 365 393 IPR002048 GO:0005509
Gabi1884g00015 542 MobiDBLite consensus disorder prediction 15 41 - -
Gabi1884g00015 542 Pfam Protein kinase domain 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1884g00015 542 CDD STKc_CAMK 59 317 - -
Gabi1884g00015 542 SUPERFAMILY Protein kinase-like (PK-like) 56 326 IPR011009 -
Gabi1884g00015 542 SMART serkin_6 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1884g00015 542 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Gabi1884g00015 542 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1884g00015 542 FunFam calcium-dependent protein kinase 13 146 326 - -
Gabi1884g00015 542 SUPERFAMILY EF-hand 346 525 IPR011992 -
Gabi1884g00015 542 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Gabi1884g00015 542 FunFam Calcium-dependent protein kinase 7 327 502 - -
Gabi1884g00015 542 CDD EFh 437 499 IPR002048 GO:0005509
Gabi1884g00015 542 Pfam EF-hand domain pair 366 425 IPR002048 GO:0005509
Gabi1884g00015 542 Pfam EF-hand domain pair 436 499 IPR002048 GO:0005509
Gabi1884g00015 542 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Gabi1884g00015 542 Gene3D Transferase(Phosphotransferase) domain 1 146 326 - -
Gabi1884g00015 542 Gene3D Phosphorylase Kinase; domain 1 61 145 - -
Gabi1884g00015 542 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Gabi1884g00015 542 Gene3D - 327 502 - -
Gabi1884g00015 542 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Gabi1884g00015 542 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Gabi1884g00015 542 FunFam Calcium-dependent protein kinase 1 62 145 - -
Gabi1884g00015 542 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Gabi1884g00015 542 MobiDBLite consensus disorder prediction 15 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1884g00015 Gabi-Chr1884 82277 87276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1884g00015 1 542 EF-hand Containing Proteins AT1G18890 80.550 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1884g00015 Pkinase 1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1884g00015 K13412 - gmx:100800559 960.674